nadegeguiglielmoni / GraphUnzip
Unzip assembly graphs with Hi-C data and/or long reads.
☆25Updated last month
Related projects ⓘ
Alternatives and complementary repositories for GraphUnzip
- Haploidy and Size Completeness Estimation☆13Updated 7 months ago
- FastK based version of Merqury☆22Updated 2 weeks ago
- assembly evaluation tool☆34Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated 11 months ago
- Extracting paths from assembly graphs☆22Updated 6 months ago
- Statistics and analysis for variation graphs☆31Updated 3 weeks ago
- recompute GFA link overlaps☆25Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆21Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆33Updated 2 weeks ago
- SV calling for diploid assemblies☆23Updated 7 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆31Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 weeks ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆18Updated 2 months ago
- ☆32Updated 8 months ago
- Extracts subgraphs or components from a graph in GFA format☆22Updated this week
- The MafFilter genome alignment processor☆17Updated last month
- Scaffolding with Ultralong Reads☆14Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 10 months ago