nadegeguiglielmoni / GraphUnzipLinks
Unzip assembly graphs with Hi-C data and/or long reads.
☆27Updated last year
Alternatives and similar repositories for GraphUnzip
Users that are interested in GraphUnzip are comparing it to the libraries listed below
Sorting:
- A Hi-C scaffolding method☆22Updated 3 years ago
- FastK based version of Merqury☆28Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 4 months ago
- Extracting paths from assembly graphs☆24Updated last year
- ☆28Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆23Updated this week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- ☆26Updated 3 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 8 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Statistics and analysis for variation graphs☆46Updated 10 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 3 years ago
- Domain based annotation of transposable elements☆20Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- TD2☆22Updated 5 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- Programs implementing the trio-binning genome assembly method☆18Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- SV calling for diploid assemblies☆29Updated last year