shelkmike / MabsLinks
Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
☆31Updated 2 months ago
Alternatives and similar repositories for Mabs
Users that are interested in Mabs are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆37Updated last year
- ☆41Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆21Updated last year
- Multi-genome synteny block visualization tool☆43Updated 6 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆25Updated 3 weeks ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆30Updated 7 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆36Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated 2 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Genome Annotation Pipeline☆36Updated 11 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆37Updated 11 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Domain based annotation of transposable elements☆20Updated 2 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Identification of transposable element families from pangenome polymorphisms☆52Updated 2 months ago
- ☆37Updated 9 months ago
- Statistics and analysis for variation graphs☆45Updated 7 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 8 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 5 months ago