shelkmike / Mabs
Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
☆31Updated 4 months ago
Alternatives and similar repositories for Mabs:
Users that are interested in Mabs are comparing it to the libraries listed below
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆35Updated last year
- ☆33Updated 5 months ago
- ☆28Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 2 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆11Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- ☆27Updated 2 weeks ago
- ☆20Updated 8 months ago
- ☆23Updated 8 months ago
- ☆29Updated 3 months ago
- ☆27Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆16Updated 5 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆26Updated 5 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆17Updated this week
- Multi-genome synteny block visualization tool☆33Updated 3 months ago
- ☆40Updated last year
- ☆10Updated 5 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆29Updated 3 months ago
- ☆34Updated 2 years ago