shelkmike / MabsView external linksLinks
Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
☆35Dec 24, 2025Updated last month
Alternatives and similar repositories for Mabs
Users that are interested in Mabs are comparing it to the libraries listed below
Sorting:
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 4 months ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- ☆24Dec 15, 2025Updated last month
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆101Updated this week
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago
- ☆45Dec 11, 2025Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆136Feb 5, 2026Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆46Feb 4, 2026Updated last week
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- ☆16Jul 25, 2021Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 2 months ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated last month
- A genome completeness evaluation tool based on miniprot☆233Sep 18, 2025Updated 4 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Jan 29, 2026Updated 2 weeks ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 3 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Dec 10, 2025Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- Chromosome-level synteny plotting using orthologous regions☆31Sep 19, 2024Updated last year
- ☆33Jul 9, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Dec 15, 2025Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Linear-time de novo Long Read Assembler☆41Oct 22, 2025Updated 3 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Jan 21, 2026Updated 3 weeks ago
- High-precision TE Annotator☆150Dec 4, 2025Updated 2 months ago
- Automatic evaluation of HGTs☆30Jan 31, 2025Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 9 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Dec 3, 2025Updated 2 months ago
- A dotplot generator for large chromosomes☆43Oct 3, 2023Updated 2 years ago
- ☆119Oct 10, 2025Updated 4 months ago
- base-level dotplots from PAF alignments☆30Sep 18, 2025Updated 4 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆30Jan 19, 2026Updated 3 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆158Nov 24, 2025Updated 2 months ago