shelkmike / Mabs
Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
☆26Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for Mabs
- ☆29Updated last week
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- ☆28Updated 2 months ago
- ☆24Updated 10 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆33Updated last year
- ☆20Updated 3 months ago
- A genome assembly assessment pipeline.☆36Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆17Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- ☆36Updated last year
- Genome Annotation Pipeline☆32Updated 3 months ago
- A tool for evaluating long-read de novo assembly results☆27Updated 2 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆38Updated 3 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆27Updated 2 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- ☆24Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Automatic evaluation of HGTs☆25Updated 2 months ago
- ☆32Updated 8 months ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- ☆31Updated last year
- ☆28Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- A organelle de novo genome assembly toolkit☆44Updated 3 weeks ago
- HiCAT new project☆27Updated 11 months ago