shelkmike / MabsLinks
Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
☆31Updated last month
Alternatives and similar repositories for Mabs
Users that are interested in Mabs are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- ☆36Updated this week
- ☆35Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Statistics and analysis for variation graphs☆40Updated 6 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- ☆35Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- ☆30Updated 3 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 5 months ago
- ☆40Updated 2 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆14Updated 6 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- FastK based version of Merqury☆25Updated 3 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- ☆35Updated 7 months ago
- This is a method to find telomeres and centromeres in plants.☆40Updated 2 years ago