marcelauliano / MitoHiFiLinks
Find, circularise and annotate mitogenome from PacBio assemblies
☆185Updated 3 months ago
Alternatives and similar repositories for MitoHiFi
Users that are interested in MitoHiFi are comparing it to the libraries listed below
Sorting:
- Reference-free profiling of polyploid genomes☆120Updated 2 months ago
- Nanopore data assembler☆158Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆208Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆175Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- A genome completeness evaluation tool based on miniprot☆216Updated 3 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 9 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆108Updated last year
- Foreign Contamination Screening caller scripts and documentation☆133Updated 4 months ago
- Yet another Hi-C scaffolding tool☆158Updated 9 months ago
- Version 5 of the CAFE phylogenetics software☆138Updated 5 months ago
- ☆213Updated 6 months ago
- Structural Variant Identification Method using Genome Assemblies☆121Updated 2 years ago
- Pangenome-based genome inference☆135Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆141Updated 2 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆151Updated last month
- source code for EVM☆116Updated 8 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 9 months ago
- Get assembly statistics from FASTA and FASTQ files☆121Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆111Updated 2 months ago
- ☆205Updated last week
- Constructing a pangenome gene graph☆193Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆201Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆215Updated 11 months ago
- Collection of tools for the analysis of CpG data☆89Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Yet another k-mer analyzer☆144Updated last year
- ☆153Updated this week