marcelauliano / MitoHiFi
Find, circularise and annotate mitogenome from PacBio assemblies
☆169Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for MitoHiFi
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆92Updated 7 months ago
- A genome completeness evaluation tool based on miniprot☆178Updated last month
- Constructing a pangenome gene graph☆174Updated 4 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 10 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 6 months ago
- Nanopore data assembler☆136Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- ☆76Updated last week
- ☆152Updated 2 months ago
- haplotypic duplication identification tool☆209Updated 11 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆141Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆192Updated 10 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆101Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆213Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆148Updated 11 months ago
- Yet another Hi-C scaffolding tool☆131Updated 2 weeks ago
- Any Way to Show Multi genomic Synteny☆159Updated last month
- ☆121Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆81Updated 4 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆123Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆143Updated 3 weeks ago
- Collection of tools for the analysis of CpG data☆74Updated 9 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆162Updated last week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆178Updated 2 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆105Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆200Updated 2 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆137Updated 2 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆152Updated last month