Find, circularise and annotate mitogenome from PacBio assemblies
☆197May 11, 2025Updated last year
Alternatives and similar repositories for MitoHiFi
Users that are interested in MitoHiFi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- k-mer based assembly evaluation☆346May 21, 2026Updated last month
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated last week
- haplotypic duplication identification tool☆291Oct 30, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆115Sep 2, 2025Updated 10 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated 2 months ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆127Jun 18, 2026Updated 2 weeks ago
- ☆122Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Synteny and Rearrangement Identifier☆474Jul 1, 2026Updated last week
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆388Feb 13, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆66Dec 8, 2025Updated 7 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆170Nov 24, 2025Updated 7 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated 2 weeks ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆170Jul 1, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A genome completeness evaluation tool based on miniprot☆250Jun 20, 2026Updated 2 weeks ago
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆406Jan 5, 2026Updated 6 months ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆788May 31, 2026Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆69Dec 2, 2022Updated 3 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆157Jun 26, 2026Updated last week
- A genomic k-mer counter (and sequence utility) with nice features.☆169Jun 3, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆206Nov 23, 2025Updated 7 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆214Aug 21, 2024Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 4 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆183Jun 9, 2026Updated 3 weeks ago
- This is the standalone version of the EviAnn pipeline☆155Jun 24, 2026Updated 2 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago