yeeus / GCI
A program for assessing the T2T genome continuity
☆65Updated 2 months ago
Alternatives and similar repositories for GCI:
Users that are interested in GCI are comparing it to the libraries listed below
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated this week
- ☆76Updated this week
- Error correction of ONT transcript reads☆59Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- ☆37Updated 2 weeks ago
- perSVade: personalized Structural Variation detection☆38Updated this week
- PacBio BAM toolkit☆39Updated this week
- ☆43Updated 8 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 4 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 10 months ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Simple pileup-based variant caller☆87Updated last week
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆43Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated last week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- ☆76Updated 4 years ago
- A Nextflow pipeline for evaluating assembly quality☆28Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- A tutorial on structural variant calling for short read sequencing data☆29Updated 4 months ago
- SRF: Satellite Repeat Finder☆91Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- Neural network classification of TE☆87Updated 2 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated last month
- ☆69Updated 3 weeks ago