medvedevgroup / BubbZLinks
☆15Updated 5 years ago
Alternatives and similar repositories for BubbZ
Users that are interested in BubbZ are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆28Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- Differential k-mer analysis☆37Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆28Updated 6 months ago
- ☆26Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Convert HAL to VG☆22Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- ☆21Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- General purpose utility related to GAF files☆29Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year