medvedevgroup / BubbZLinks
☆15Updated 4 years ago
Alternatives and similar repositories for BubbZ
Users that are interested in BubbZ are comparing it to the libraries listed below
Sorting:
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Differential k-mer analysis☆36Updated last year
- ☆28Updated 3 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 weeks ago
- ☆28Updated 9 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆31Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- ☆45Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 9 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- ☆41Updated 2 months ago