medvedevgroup / BubbZLinks
☆16Updated 5 years ago
Alternatives and similar repositories for BubbZ
Users that are interested in BubbZ are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆28Updated 10 months ago
- ☆31Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆28Updated 4 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Convert HAL to VG☆22Updated 11 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- A derivative of GenomeScope2.0 modified to work with FastK☆9Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- ☆26Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- ☆45Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 2 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Differential k-mer analysis☆36Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago