hahnlab / cafe_tutorialLinks
☆17Updated 4 years ago
Alternatives and similar repositories for cafe_tutorial
Users that are interested in cafe_tutorial are comparing it to the libraries listed below
Sorting:
- DNA序列比对结果 可视化展示工具☆56Updated 2 years ago
- Genome annotation pipeline☆64Updated last year
- A tool for plotting CAFE5 gene family expansion/contraction result☆33Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated last week
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆35Updated last week
- Neural network classification of TE☆96Updated last month
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Updated 8 months ago
- A parallel wrapper for LTR_FINDER☆55Updated 8 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆72Updated last week
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆42Updated 2 months ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- An efficient assembly tool for plant mitochondrial genome☆65Updated last year
- HiCAT new project☆29Updated 6 months ago
- ☆40Updated 4 months ago
- A novel genome assembly pipeline based on deep learning☆66Updated 11 months ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆65Updated last month
- ☆41Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- NLR-Annotator upload☆73Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 7 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆74Updated last week
- ☆83Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 3 months ago
- ☆82Updated this week
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated last year