hahnlab / cafe_tutorial
☆14Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for cafe_tutorial
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆35Updated 4 months ago
- DNA序列比对结果 可视化展示工具☆43Updated last year
- An efficient assembly tool for plant mitochondrial genome☆28Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆63Updated 3 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆40Updated 10 months ago
- ☆36Updated last year
- Graph-based Sequence Assembly Toolkit☆20Updated 6 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆25Updated this week
- A tool for plotting CAFE5 gene family expansion/contraction result☆26Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- MitoDNA extending assembler from NGS data☆20Updated 10 months ago
- A novel genome assembly pipeline based on deep learning☆53Updated last month
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- HiCAT new project☆27Updated 11 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆13Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated last month
- Genome Annotation Pipeline☆32Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- Genome annotation pipeline☆53Updated 4 months ago
- High-precision TE Annotator☆65Updated last week
- ☆20Updated 3 months ago
- ☆28Updated 2 months ago
- A genome assembly assessment pipeline.☆36Updated last year
- paml documentation and tutorials☆47Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆42Updated 7 months ago
- scripts☆15Updated 6 years ago