☆18Jul 15, 2021Updated 4 years ago
Alternatives and similar repositories for cafe_tutorial
Users that are interested in cafe_tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 10 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Mar 13, 2026Updated last month
- ☆21Nov 21, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool for plotting CAFE5 gene family expansion/contraction result☆36Sep 22, 2023Updated 2 years ago
- Software package for estimating fine-scale recombination rate.☆18Jun 8, 2021Updated 4 years ago
- ☆21Mar 24, 2026Updated last month
- ☆41Jun 8, 2023Updated 2 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated 8 months ago
- Genome annotation pipeline☆66Jun 25, 2024Updated last year
- ☆16Apr 3, 2023Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated last year
- A collection of tools for Genome Assembly analysis☆23May 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆17Mar 14, 2022Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- ☆21Dec 13, 2024Updated last year
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆93Jan 25, 2026Updated 3 months ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- Yet another Hi-C scaffolding tool☆180Nov 4, 2024Updated last year
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts of population genomics analysis☆36May 8, 2018Updated 7 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- DNA序列比对结果 可视化展示工具☆58Dec 18, 2022Updated 3 years ago
- ☆26Jan 26, 2026Updated 3 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆65Sep 5, 2019Updated 6 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 7 months ago
- ☆15Feb 22, 2022Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- Daily usage script recording☆12Apr 17, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆266Jan 5, 2026Updated 3 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 2 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- ☆32Feb 14, 2026Updated 2 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆112Mar 13, 2026Updated last month