mlin / gfabaseLinks
GFA insert into GenomicSQLite
☆48Updated 4 years ago
Alternatives and similar repositories for gfabase
Users that are interested in gfabase are comparing it to the libraries listed below
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- the pangenome graph evaluator☆28Updated 4 years ago
- ☆34Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- General purpose utility related to GAF files☆29Updated last week
- Differential k-mer analysis☆37Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- recompute GFA link overlaps☆25Updated 3 years ago
- Statistics and analysis for variation graphs☆45Updated 9 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 11 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆28Updated 11 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- ☆17Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago