mlin / gfabase
GFA insert into GenomicSQLite
☆49Updated 3 years ago
Alternatives and similar repositories for gfabase:
Users that are interested in gfabase are comparing it to the libraries listed below
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆23Updated 2 months ago
- Convert HAL to VG☆22Updated 8 months ago
- ☆35Updated 5 years ago
- General purpose utility related to GAF files☆24Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 6 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- the pangenome graph evaluator☆26Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated 3 months ago
- ☆16Updated last year
- ☆28Updated last week
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆28Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- Targeted genotyper for complex polymorphic genes☆20Updated this week