GFA insert into GenomicSQLite
☆49Jun 7, 2021Updated 5 years ago
Alternatives and similar repositories for gfabase
Users that are interested in gfabase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 weeks ago
- alignment to variation graph inducer☆161Jun 17, 2026Updated last week
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 3 months ago
- ☆101Apr 22, 2024Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆34Jun 12, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- implicit pangenome graph☆109Jun 17, 2026Updated last week
- ☆21Jun 22, 2026Updated last week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- ☆18Jan 29, 2025Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆15Jun 29, 2021Updated 5 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆59Dec 12, 2023Updated 2 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- General purpose utility related to GAF files☆29May 20, 2026Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆165Jun 5, 2026Updated 3 weeks ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- ☆288Dec 29, 2025Updated 6 months ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Assembled Genomes Compressor☆183May 6, 2026Updated last month