mlin / gfabaseLinks
GFA insert into GenomicSQLite
☆49Updated 4 years ago
Alternatives and similar repositories for gfabase
Users that are interested in gfabase are comparing it to the libraries listed below
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- Differential k-mer analysis☆36Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- Statistics and analysis for variation graphs☆41Updated 6 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆34Updated 5 years ago
- General purpose utility related to GAF files☆28Updated last week
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- the pangenome graph evaluator☆27Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆28Updated 9 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- ☆17Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- ☆28Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago