Alternatives and similar repositories for simple-dotplot

Users that are interested in simple-dotplot are comparing it to the libraries listed below

• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆29Updated 5 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆23Updated this week
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆32Updated last month
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• mrvollger / NucFreq
  ☆38Updated last month
• at-cg / RAFT
  ☆28Updated last year
• oclb / pantree
  ☆17Updated this week
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated 11 months ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆22Updated 2 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆18Updated 3 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• MoinSebi / gfa2bin
  ☆26Updated 3 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆33Updated last week
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆36Updated 3 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 8 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year