rlorigro / simple-dotplotLinks
Very simple and configurable all-in-one dotplot program
☆14Updated 2 years ago
Alternatives and similar repositories for simple-dotplot
Users that are interested in simple-dotplot are comparing it to the libraries listed below
Sorting:
- SV calling for diploid assemblies☆28Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated 2 weeks ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- ☆38Updated last year
- Tandem repeat genotyping with long reads☆30Updated 2 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Extracting paths from assembly graphs☆24Updated last year
- ☆28Updated last year
- ☆25Updated 2 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated 2 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- ☆17Updated last month
- Phasing reads with secondary alignments☆20Updated 10 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆16Updated 4 years ago