rlorigro / simple-dotplotLinks
Very simple and configurable all-in-one dotplot program
☆13Updated 2 years ago
Alternatives and similar repositories for simple-dotplot
Users that are interested in simple-dotplot are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- ☆19Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- SV calling for diploid assemblies☆27Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆12Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- A K-mer classifier for HiFi reads☆9Updated last year
- Phasing reads with secondary alignments☆18Updated 6 months ago
- The MafFilter genome alignment processor☆18Updated 3 weeks ago
- Prefix-renaming FASTA records really fast.☆17Updated 11 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆15Updated 11 months ago
- ☆23Updated 9 months ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- ☆24Updated 6 months ago
- ☆30Updated 5 years ago
- Draw a dot plot from a paf alignment☆29Updated last month
- ☆35Updated last year
- ☆17Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- General purpose utility related to GAF files☆28Updated last week
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago