piosierra / panteraLinks
Identification of transposable element families from pangenome polymorphisms
☆53Updated 5 months ago
Alternatives and similar repositories for pantera
Users that are interested in pantera are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆54Updated 4 months ago
- ☆31Updated 10 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- TGS scaffolding☆47Updated 4 years ago
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- Tool for globally phasing diploid assembly graphs with orthogonal data☆42Updated 11 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last week
- ☆38Updated last month
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- HiCAT new project☆29Updated 6 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 5 months ago
- ☆36Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated this week
- ☆38Updated 2 years ago
- Multi-genome synteny block visualization tool☆47Updated last month
- Call select base modifications in PacBio HiFi reads☆15Updated last week
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆42Updated last month
- Statistics and analysis for variation graphs☆46Updated 11 months ago
- ☆32Updated 8 months ago
- ☆19Updated 11 months ago
- A tool for evaluating long-read de novo assembly results☆48Updated last year
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year