piosierra / pantera
Identification of transposable element families from pangenome polymorphisms
☆45Updated last month
Alternatives and similar repositories for pantera:
Users that are interested in pantera are comparing it to the libraries listed below
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆29Updated 3 months ago
- Statistics and analysis for variation graphs☆39Updated 3 months ago
- ☆86Updated last month
- ☆34Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆79Updated last week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 4 months ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆35Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- A tool for evaluating long-read de novo assembly results☆35Updated 7 months ago
- ☆15Updated 4 months ago
- Call select base modifications in PacBio HiFi reads☆6Updated 2 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆25Updated last month
- TGS scaffolding☆46Updated 3 years ago
- ☆43Updated 8 years ago
- A organelle de novo genome assembly toolkit☆58Updated last month
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆32Updated 2 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆29Updated 8 months ago
- ☆76Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago