piosierra / panteraLinks
Identification of transposable element families from pangenome polymorphisms
☆45Updated 3 weeks ago
Alternatives and similar repositories for pantera
Users that are interested in pantera are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Statistics and analysis for variation graphs☆40Updated 6 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- ☆30Updated 5 months ago
- ☆35Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆97Updated this week
- TGS scaffolding☆46Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- ☆35Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 8 months ago
- Whole genome visualization and comparative genomics in R☆13Updated 4 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆28Updated last week
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated last week
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆16Updated 7 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- ☆76Updated 5 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆66Updated 4 years ago
- ☆44Updated 8 years ago
- ☆35Updated this week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆63Updated 5 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- A tool for evaluating long-read de novo assembly results☆36Updated 10 months ago