human-pangenomics / hprc_intermediate_assembly
☆24Updated 2 weeks ago
Alternatives and similar repositories for hprc_intermediate_assembly:
Users that are interested in hprc_intermediate_assembly are comparing it to the libraries listed below
- Workflow Description Language (WDL) scripts for common vg workflows☆20Updated 2 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- ☆79Updated last month
- ☆48Updated 10 months ago
- VNTR annotation using motif selection☆32Updated last week
- Improved Phased Assembler☆28Updated 3 years ago
- De novo construction of isoforms from long-read data☆26Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated this week
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- ☆17Updated last year
- Variant annotation and merging pipeline☆33Updated 3 weeks ago
- SV calling for diploid assemblies☆26Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 2 weeks ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated last week
- ☆56Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆47Updated 4 years ago
- Call select base modifications in PacBio HiFi reads☆6Updated 2 months ago
- implicit pangenome graph☆58Updated this week
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- CAncer Standards Long-read Evaluation☆25Updated 2 months ago
- ☆32Updated this week
- Error correction of ONT transcript reads☆58Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 3 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆79Updated 2 weeks ago
- ☆34Updated 2 years ago