Alternatives and similar repositories for hprc_intermediate_assembly

Users that are interested in hprc_intermediate_assembly are comparing it to the libraries listed below

• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆61Updated this week
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆41Updated 3 weeks ago
• shilpagarg / WHdenovo
  ☆46Updated 5 years ago
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆60Updated 4 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆50Updated 6 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 2 months ago
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆37Updated 2 weeks ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 3 years ago
• MeHelmy / princess
  ☆81Updated 6 months ago
• shilpagarg / DipAsm
  ☆77Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• GeneDx / pgr-tk
  ☆100Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated last month
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆67Updated 5 months ago
• human-pangenomics / HPP_Year1_Assemblies
  Assemblies from HPP Year 1 production
  ☆76Updated 2 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last week
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆38Updated last year
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆57Updated this week
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆33Updated 4 months ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆78Updated 6 months ago
• ablab / VerityMap
  ☆37Updated 2 years ago
• kjenike / panagram
  ☆66Updated 3 weeks ago
• Sentieon / hap-eval
  A VCF comparison engine for structual variant benchmarking
  ☆23Updated last year
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆36Updated 2 weeks ago
• maickrau / ribotin
  ☆36Updated 2 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆14Updated 7 months ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆54Updated 2 months ago