☆44Feb 23, 2026Updated last week
Alternatives and similar repositories for hprc_intermediate_assembly
Users that are interested in hprc_intermediate_assembly are comparing it to the libraries listed below
Sorting:
- Assemblies from HPP Year 1 production☆80May 9, 2023Updated 2 years ago
- ☆61Jun 14, 2021Updated 4 years ago
- A complete diploid human genome☆144Feb 23, 2026Updated last week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- ☆127Oct 18, 2023Updated 2 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- implicit pangenome graph☆89Feb 27, 2026Updated last week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- ☆38Oct 6, 2025Updated 5 months ago
- Telomere-to-Telomere diploid Indian Genome☆14Feb 11, 2026Updated 3 weeks ago
- ☆18May 10, 2023Updated 2 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- ☆19Apr 15, 2024Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 4 months ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- WDL’s and Dockerfiles for assembly QC process☆72Jul 26, 2025Updated 7 months ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆104Jul 23, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- ☆13Feb 5, 2026Updated last month
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- Workflow Description Language (WDL) scripts for common vg workflows☆23Dec 15, 2025Updated 2 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 3 weeks ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated 11 months ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 weeks ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- ☆21Feb 5, 2026Updated last month
- Draw a dot plot from a paf alignment☆38Sep 18, 2025Updated 5 months ago