Alternatives and similar repositories for amylase_diversity_project

Users that are interested in amylase_diversity_project are comparing it to the libraries listed below

• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated this week
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆16Updated 2 years ago
• baozg / phased-assembly-check
  ☆31Updated 9 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• tangerzhang / calc_switchErr
  ☆28Updated 6 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• mrvollger / NucFreq
  ☆38Updated 3 weeks ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated last month
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆31Updated 4 months ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated last month
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆41Updated last month
• maickrau / ribotin
  ☆36Updated 3 months ago
• MoritzBlumer / winpca
  WinPCA. A package for windowed principal component analysis.
  ☆38Updated 3 weeks ago
• simon19891216 / CentIER
  ☆38Updated 3 months ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated last year
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• Sh1ne111 / KMERIA
  A KMER-based genome-wIde Assocation testing approach on polyploids
  ☆25Updated 2 weeks ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆41Updated 11 months ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago