sudmantlab / amylase_diversity_projectView external linksLinks
☆21Dec 13, 2024Updated last year
Alternatives and similar repositories for amylase_diversity_project
Users that are interested in amylase_diversity_project are comparing it to the libraries listed below
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆25Jan 23, 2026Updated 3 weeks ago
- The IntroBlocker ancestry inference algorithm☆17Oct 24, 2023Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- implicit pangenome graph☆88Feb 9, 2026Updated last week
- Inferring natural selection by comparative population genomic analysis across species☆25Oct 31, 2023Updated 2 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jan 31, 2026Updated 2 weeks ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Oct 29, 2025Updated 3 months ago
- ☆16Mar 17, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- WinPCA. A package for windowed principal component analysis.☆45Feb 2, 2026Updated 2 weeks ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 6, 2026Updated last week
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 4 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 6 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- ☆10Jan 27, 2025Updated last year
- Better Alignments with Translated HMMER☆24Updated this week
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆21Feb 5, 2026Updated last week
- ☆28Aug 7, 2025Updated 6 months ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- Identification of transposable element families from pangenome polymorphisms☆55Jun 3, 2025Updated 8 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated last month
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 8 months ago
- tomato graph pangenome☆87Dec 13, 2022Updated 3 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Oct 22, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- ☆15Jun 29, 2021Updated 4 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 9 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Jun 10, 2025Updated 8 months ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆41Feb 9, 2026Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Complete assemblies of non-human primate genomes☆56May 20, 2025Updated 8 months ago