☆21Dec 13, 2024Updated last year
Alternatives and similar repositories for amylase_diversity_project
Users that are interested in amylase_diversity_project are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- The IntroBlocker ancestry inference algorithm☆17Oct 24, 2023Updated 2 years ago
- implicit pangenome graph☆100Updated this week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Updated this week
- ☆29Aug 7, 2025Updated 8 months ago
- ☆17Mar 17, 2023Updated 3 years ago
- ☆10Jan 27, 2025Updated last year
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆36Updated this week
- WinPCA. A package for windowed principal component analysis.☆48Apr 2, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 6 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 8 months ago
- ☆21Mar 24, 2026Updated 3 weeks ago
- Better Alignments with Translated HMMER☆25Apr 8, 2026Updated last week
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Mar 21, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- tomato graph pangenome☆89Dec 13, 2022Updated 3 years ago
- Python library to identify Identical By State regions☆23Mar 19, 2023Updated 3 years ago
- ☆28Oct 20, 2023Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 10 months ago
- ☆18Jan 29, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 10 months ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Complete assemblies of non-human primate genomes☆58May 20, 2025Updated 10 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 11 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 11 months ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 10 months ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆48Oct 22, 2024Updated last year