chfi / rs-gfa-utils
☆15Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for rs-gfa-utils
- Extracting paths from assembly graphs☆22Updated 6 months ago
- Rust implementation of VG handle graph☆18Updated 11 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Align subreads to ccs reads☆13Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆16Updated 5 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- Prefix-renaming FASTA records really fast.☆15Updated 5 months ago
- convert variation graph alignments to coverage maps over nodes☆21Updated this week
- recompute GFA link overlaps☆25Updated 2 years ago
- Statistics and analysis for variation graphs☆31Updated this week
- the pangenome graph evaluator☆23Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 weeks ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Updated 11 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆16Updated last month
- Kmer Analysis of Pileups for Genotyping☆19Updated 2 weeks ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- ☆21Updated last month
- Computational Pangenomics☆15Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆31Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- ☆16Updated 3 years ago
- ☆17Updated last month
- ☆11Updated last week
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆11Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month