☆15Jun 29, 2021Updated 4 years ago
Alternatives and similar repositories for rs-gfa-utils
Users that are interested in rs-gfa-utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆18Jan 29, 2025Updated last year
- generating hardware accelerators for pangenomic graph queries☆42Updated this week
- ☆30Mar 27, 2024Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- ANI based satellite annotation☆26Mar 2, 2026Updated 2 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 14, 2026Updated 2 weeks ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 9 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 11 months ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 11 months ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Jan 21, 2026Updated 3 months ago
- alignment to variation graph inducer☆159Apr 11, 2026Updated 3 weeks ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 9 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago