Alternatives and similar repositories for rs-gfa-utils

Users that are interested in rs-gfa-utils are comparing it to the libraries listed below

• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated last month
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 2 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• MoinSebi / gfa2bin
  ☆25Updated 3 weeks ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 9 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 3 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 2 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• pangenome / povu
  A toolkit for exploring regions of variation in a variation graph
  ☆11Updated last week
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• davidebolo1993 / cosigt
  ☆21Updated this week
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated last month
• chfi / pafview
  ☆17Updated 7 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated 3 weeks ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated last month
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆18Updated 3 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆26Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆15Updated 4 months ago
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆10Updated 2 months ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 9 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated last month
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 8 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated this week
• maojanlin / biastools
  Reference bias measuring toolkit
  ☆18Updated 4 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 11 months ago