chfi / rs-gfa-utilsLinks
☆15Updated 4 years ago
Alternatives and similar repositories for rs-gfa-utils
Users that are interested in rs-gfa-utils are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆27Updated last week
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- ☆28Updated 5 months ago
- base-level dotplots from PAF alignments☆30Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- ☆18Updated last year
- A toolkit for exploring regions of variation in pangenomes☆12Updated last week
- Extracting paths from assembly graphs☆24Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆25Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆35Updated this week
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated 3 weeks ago
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- Long-read aligner to pangenome graphs☆29Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆40Updated 4 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Genome Assembly 102☆17Updated 9 months ago
- the pangenome graph evaluator☆29Updated 4 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆28Updated last month
- Align subreads to ccs reads☆14Updated 7 months ago
- General purpose utility related to GAF files☆29Updated this week
- De Bruijn graph construction for large k.☆17Updated 4 years ago