A viewer for multiple alignment format (MAF) files in JBrowse 2
☆14Aug 4, 2026Updated last month
Alternatives and similar repositories for jbrowse-plugin-mafviewer
Users that are interested in jbrowse-plugin-mafviewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- ☆18Jan 29, 2025Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- ☆21Dec 13, 2024Updated last year
- Multiple sequence alignment of long tandem repeats☆32Jun 23, 2026Updated 2 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 9 months ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated 2 months ago
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 6 months ago
- ☆45Dec 11, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- ☆19Nov 9, 2020Updated 5 years ago
- COsine SImilarity-based Genotyper using pangenomes☆36Updated this week
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- ☆30Jul 13, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- ☆16Apr 3, 2023Updated 3 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Better Alignments with Translated HMMER☆27Updated this week
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- ☆16Updated this week
- ☆24Nov 19, 2025Updated 9 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Updated this week
- Variant Calling for the HPRC2☆16May 26, 2026Updated 3 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆50Aug 5, 2026Updated last month
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- Chromosome-level synteny plotting using orthologous regions☆33Sep 19, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Identification of conserved non-coding sequences in plants☆51Jun 9, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ☆10Jan 27, 2025Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated last month