A viewer for multiple alignment format (MAF) files in JBrowse 2
☆14Jun 3, 2026Updated last month
Alternatives and similar repositories for jbrowse-plugin-mafviewer
Users that are interested in jbrowse-plugin-mafviewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- ☆18Jan 29, 2025Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 7 months ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated 2 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- ☆21Dec 13, 2024Updated last year
- ☆19Nov 9, 2020Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆50May 6, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Better Alignments with Translated HMMER☆26Jun 15, 2026Updated 3 weeks ago
- Multiple sequence alignment of long tandem repeats☆29Jun 23, 2026Updated 2 weeks ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- ☆10Jan 27, 2025Updated last year
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆85Aug 16, 2025Updated 10 months ago
- A tool for performing collinearity-incorporating homology inference☆34Oct 7, 2023Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Identification of transposable element families from pangenome polymorphisms☆56Jun 8, 2026Updated last month
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆21Jun 30, 2026Updated last week
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 11 months ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year