Evaluate variant calls and its combination with k-mer multiplicity
☆72Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for merfin
Users that are interested in merfin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- haplotypic duplication identification tool☆292Oct 30, 2025Updated 8 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆115Jun 6, 2021Updated 5 years ago
- VGP repository for the genome assembly working group☆194Mar 31, 2026Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆112Jul 23, 2024Updated 2 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Long read based human genomic structural variation detection with cuteSV☆291Jul 12, 2026Updated 2 weeks ago
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- Reference-free profiling of polyploid genomes☆144Oct 2, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- alignment to variation graph inducer☆163Updated this week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- Genome Pair Rapid Dotter☆70Sep 2, 2021Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago