arangrhie / merfinView external linksLinks
Evaluate variant calls and its combination with k-mer multiplicity
☆67Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for merfin
Users that are interested in merfin are comparing it to the libraries listed below
Sorting:
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 4 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Yet another k-mer analyzer☆160Dec 30, 2025Updated last month
- Long read aligner☆114May 26, 2023Updated 2 years ago
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- Long read / genome alignment software☆309Dec 16, 2025Updated 2 months ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 3 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Jun 6, 2021Updated 4 years ago
- OpenGL Powered Pretext Contact Map Viewer☆55Updated this week
- Yet another Hi-C scaffolding tool☆170Nov 4, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆164Sep 8, 2024Updated last year
- SRF: Satellite Repeat Finder☆101Jan 8, 2024Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Jul 23, 2024Updated last year
- Long read based human genomic structural variation detection with cuteSV☆278Sep 30, 2025Updated 4 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- VGP repository for the genome assembly working group☆193May 21, 2025Updated 8 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Feb 6, 2026Updated last week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆231Sep 6, 2024Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- ☆39Feb 22, 2023Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- Identification of segmental duplications in the genome☆27Mar 1, 2022Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- ☆78Jun 12, 2020Updated 5 years ago
- Genome Pair Rapid Dotter☆67Sep 2, 2021Updated 4 years ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- 3D de novo assembly (3D DNA) pipeline☆221Nov 29, 2023Updated 2 years ago
- software tools for haplotype assembly from sequence data☆226Feb 9, 2025Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago