Alternatives and similar repositories for msa2gfa

Users that are interested in msa2gfa are comparing it to the libraries listed below

• ekg / gimbricate
  recompute GFA link overlaps
  ☆26Updated 2 years ago
• chfi / gfainject
  ☆17Updated 2 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 4 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 9 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 2 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated 4 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• baoxingsong / genomeAlignment
  Compare different genome alignment tools using a wide range of genomes with different complexities.
  ☆13Updated 2 years ago
• MoinSebi / gfa2bin
  ☆25Updated 3 weeks ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆18Updated 3 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated last month
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• MoinSebi / gSV
  ☆11Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 4 months ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆20Updated 4 years ago
• PacificBiosciences / actc
  Align subreads to ccs reads
  ☆14Updated 2 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 4 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆35Updated 2 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated last year
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 11 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• lh3 / gffio
  ☆32Updated 2 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 2 months ago