orangeSi / bam2msaLinks
convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
☆13Updated last year
Alternatives and similar repositories for bam2msa
Users that are interested in bam2msa are comparing it to the libraries listed below
Sorting:
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆28Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆24Updated 3 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Updated 5 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last week
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- ☆44Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- defusion☆14Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆15Updated 7 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated this week
- Reference genome quality scores☆21Updated 4 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 3 weeks ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- ☆20Updated last year
- Reference bias measuring toolkit☆18Updated 4 months ago