convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
☆13May 21, 2024Updated 2 years ago
Alternatives and similar repositories for bam2msa
Users that are interested in bam2msa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- ☆16Oct 8, 2026Updated 3 weeks ago
- ☆15Jun 6, 2023Updated 3 years ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆13Dec 10, 2025Updated 10 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A python package to predict CRISPR-Cas PAMs☆11May 3, 2023Updated 3 years ago
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆21Apr 9, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- ☆12Jun 7, 2024Updated 2 years ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 7 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated last month
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆17Jun 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Nov 20, 2025Updated 11 months ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Jul 12, 2020Updated 6 years ago
- A rapid and low-memory multiple-genome aligner for closely related genomes☆25Sep 3, 2025Updated last year
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated 7 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Oct 16, 2026Updated last week
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated 2 years ago
- ☆11Dec 18, 2025Updated 10 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆15Nov 3, 2017Updated 8 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 3 years ago
- A mosaic genome painting tool for plant genomes☆19May 6, 2026Updated 5 months ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- ☆11Feb 12, 2022Updated 4 years ago