orangeSi / bam2msaLinks
convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
☆12Updated last year
Alternatives and similar repositories for bam2msa
Users that are interested in bam2msa are comparing it to the libraries listed below
Sorting:
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- Parallel implementation of OrthoMCL☆21Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆28Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆16Updated 2 weeks ago
- ☆20Updated last year
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- ☆32Updated 2 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆32Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 7 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- defusion☆14Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 7 months ago