rlorigro / GFAseLinks
Tool for globally phasing diploid assembly graphs with orthogonal data
☆40Updated 9 months ago
Alternatives and similar repositories for GFAse
Users that are interested in GFAse are comparing it to the libraries listed below
Sorting:
- SV calling for diploid assemblies☆28Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆37Updated last year
- ☆36Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆30Updated 7 months ago
- Draw a dot plot from a paf alignment☆34Updated last week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆16Updated last year
- ☆41Updated 3 months ago
- ☆30Updated 3 months ago
- Statistics and analysis for variation graphs☆45Updated 8 months ago
- ☆36Updated last month
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 2 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- ☆29Updated last year
- ☆31Updated 5 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- ☆27Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- A tool for evaluating long-read de novo assembly results☆39Updated last year
- use long sequenced reads to close gaps in assemblies☆38Updated 6 years ago
- ☆16Updated 3 years ago
- ☆21Updated last year
- ☆42Updated last year