Tool for globally phasing diploid assembly graphs with orthogonal data
☆43Nov 25, 2024Updated last year
Alternatives and similar repositories for GFAse
Users that are interested in GFAse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆42Oct 6, 2025Updated 8 months ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- ☆67Apr 9, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Apr 16, 2026Updated 2 months ago
- ☆37Feb 22, 2023Updated 3 years ago
- ☆122Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 7 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- ☆32Jun 18, 2026Updated 2 weeks ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- De novo assembly from Oxford Nanopore reads.☆89Updated this week
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- ☆39Feb 22, 2023Updated 3 years ago
- ☆21Jun 22, 2026Updated last week
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 4 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- ☆26Jun 27, 2026Updated last week
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆105Jun 25, 2026Updated last week
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last week
- ☆18Jan 29, 2025Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆24Apr 25, 2024Updated 2 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Draw a dot plot from a paf alignment☆45May 9, 2026Updated last month
- ☆44Dec 29, 2025Updated 6 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago