convert CHAIN format to PAF format
☆15Dec 17, 2024Updated last year
Alternatives and similar repositories for chain2paf
Users that are interested in chain2paf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆15May 3, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- ☆30Aug 7, 2025Updated last year
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated 11 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- ☆32Jun 18, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- General purpose utility related to GAF files☆36Aug 6, 2026Updated 2 weeks ago
- ☆31Aug 1, 2023Updated 3 years ago
- Enumerating bubbles in pangenome graphs☆16Aug 11, 2026Updated 2 weeks ago
- ☆11Feb 20, 2024Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 9 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Aug 5, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- ☆23Updated this week
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 9 months ago
- ☆50Jul 2, 2026Updated last month
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆21Feb 15, 2025Updated last year
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆23Jul 1, 2026Updated last month
- implicit pangenome graph☆110Aug 8, 2026Updated 2 weeks ago
- ☆59Dec 12, 2023Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 7 months ago