Alternatives and similar repositories for chain2paf:

Users that are interested in chain2paf are comparing it to the libraries listed below

• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 4 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆22Updated last week
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆22Updated this week
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆11Updated 2 months ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆12Updated last month
• brettChapman / paf2pav
  ☆9Updated 11 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 2 months ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆18Updated 3 weeks ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 9 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 7 months ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆17Updated last week
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 7 months ago
• collaborativebioinformatics / nibSV
  ☆9Updated 2 years ago
• MoinSebi / gfa2bin
  ☆14Updated last month
• abs-tudelft / variant-calling-at-scale
  Scalable and High Performance Variant Calling on Cluster Environments
  ☆10Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 5 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 4 months ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆21Updated 10 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 2 months ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• jts / mbtools
  ☆13Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last month
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 3 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆19Updated 2 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 weeks ago