☆32Jun 18, 2026Updated last month
Alternatives and similar repositories for SafFire
Users that are interested in SafFire are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 29, 2025Updated last year
- ☆44Dec 29, 2025Updated 7 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 5 months ago
- A tool for sniffing out the differences in vari-Ants☆45Apr 7, 2026Updated 4 months ago
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Transformer-based sequence correction method for genome assembly polishing☆107Mar 11, 2025Updated last year
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- ☆42Oct 6, 2025Updated 10 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- A battery of methylation tools for PacBio HiFi reads☆54Jul 15, 2026Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Whole genome visualization and comparative genomics in R☆25Feb 18, 2025Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆60Jul 19, 2025Updated last year
- ☆164Apr 13, 2026Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated 2 months ago
- implicit pangenome graph☆110Updated this week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Jul 13, 2026Updated 3 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jul 27, 2026Updated 2 weeks ago
- Workflow to identify the centromere dip regions (CDR) from methyl BAMs☆16Jun 4, 2025Updated last year
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 10 months ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- ☆37Feb 22, 2023Updated 3 years ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last month
- Joint structural variant and copy number variant caller for HiFi sequencing data☆80Nov 4, 2025Updated 9 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆46Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 9 months ago
- Tools for fiberseq data written in rust.☆69Jul 21, 2026Updated 2 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated last month
- A mosaic genome painting tool for plant genomes☆18May 6, 2026Updated 3 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 7 months ago