PacificBiosciences / aardvarkLinks
A tool for sniffing out the differences in vari-Ants
☆32Updated 2 weeks ago
Alternatives and similar repositories for aardvark
Users that are interested in aardvark are comparing it to the libraries listed below
Sorting:
- Liftover reads from sample assembly to reference☆25Updated 2 months ago
- PGR-TK: Pangenome Research Tool Kit☆21Updated 8 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- Genome browser hub for the T2T genomes and resources☆25Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- JTK -- a regional diploid genome assembler☆25Updated last year
- ☆23Updated 6 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- GBWT-based handle graph☆31Updated this week
- Telomere-to-Telomere diploid Indian Genome☆14Updated 4 months ago
- base-level dotplots from PAF alignments☆28Updated 2 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 4 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- ☆21Updated 9 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Genome Assembly 102☆16Updated 7 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- Long-read aligner to pangenome graphs☆28Updated last year
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 8 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- ☆17Updated 4 years ago