Alternatives and similar repositories for VerityMap

Users that are interested in VerityMap are comparing it to the libraries listed below

• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• mrvollger / NucFreq
  ☆38Updated 3 weeks ago
• maickrau / ribotin
  ☆36Updated 3 months ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆41Updated 11 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 4 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆44Updated this week
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 10 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 3 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated last month
• baozg / phased-assembly-check
  ☆31Updated 9 months ago
• kensung-lab / hypo-assembler
  ☆41Updated 5 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆40Updated last year
• mrvollger / SafFire
  ☆31Updated 5 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• shilpagarg / DipAsm
  ☆79Updated 5 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• i10labtitech / GINGER
  ☆29Updated last year
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated last month
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• Maggi-Chen / Inspector
  A tool for evaluating long-read de novo assembly results
  ☆48Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆27Updated 4 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago