nf-core / pangenomeLinks
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
☆96Updated last week
Alternatives and similar repositories for pangenome
Users that are interested in pangenome are comparing it to the libraries listed below
Sorting:
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- A list of software for pangenomics☆128Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 2 weeks ago
- A program for assessing the T2T genome continuity☆84Updated this week
- source code for EVM☆117Updated 9 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆82Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆123Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated 2 weeks ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- Interactive quality assessment of genome assemblies☆107Updated 4 months ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆92Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆107Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 2 years ago
- ☆117Updated this week
- Variant calling tool for long-read sequencing data☆111Updated 6 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆89Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 3 months ago
- List of genome assembly tools☆76Updated 2 weeks ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ☆66Updated 2 weeks ago
- Constructing a pangenome gene graph☆194Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆83Updated this week
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Python programs for processing GFF3 files☆99Updated last year
- High-precision TE Annotator☆129Updated this week
- Application of pan-genome for population☆109Updated 11 months ago
- A local-haplotagging-based small and structural variant caller☆80Updated 3 weeks ago