Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
☆109Oct 26, 2026Updated last week
Alternatives and similar repositories for pangenome
Users that are interested in pangenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 months ago
- ☆32Mar 27, 2024Updated 2 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- the pangenome graph builder☆520Jul 24, 2026Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆141Updated this week
- Constructing a pangenome gene graph☆213Aug 11, 2025Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆255Dec 16, 2025Updated 10 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 6 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- alignment to variation graph inducer☆166Jul 29, 2026Updated 3 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated 2 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Pangenome-based genome inference☆184Oct 26, 2026Updated last week
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- ☆46Apr 18, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code repository for the T2T-Y paper☆25Jul 11, 2023Updated 3 years ago
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated 4 months ago
- An updated pipeline for pangenome investigation☆379Updated this week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- ☆11Sep 11, 2024Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆59Mar 7, 2025Updated last year
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated 2 years ago