nf-core / pangenomeLinks
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
☆102Updated last month
Alternatives and similar repositories for pangenome
Users that are interested in pangenome are comparing it to the libraries listed below
Sorting:
- Dfam Transposable Element Tools Docker container.☆101Updated 2 weeks ago
- List of genome assembly tools☆88Updated this week
- Variant calling tool for long-read sequencing data☆116Updated 9 months ago
- Research release basecalling models and configurations☆117Updated 7 months ago
- source code for EVM☆120Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Pangenome-based genome inference☆152Updated last month
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- A list of software for pangenomics☆165Updated 3 weeks ago
- SV detection tool for nanopore sequence reads☆97Updated this week
- Constructing a pangenome gene graph☆203Updated 4 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆116Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- ☆47Updated 3 weeks ago
- Plotting tools for nanopore methylation data☆95Updated 5 months ago
- Application of pan-genome for population☆116Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated 3 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- Structural Variant Identification Method using Genome Assemblies☆130Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆126Updated 3 weeks ago
- Interactive quality assessment of genome assemblies☆116Updated 3 weeks ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆86Updated last month
- a tool for inferring species tree from sequencing reads☆156Updated 3 weeks ago
- Python programs for processing GFF3 files☆102Updated 3 weeks ago
- ☆52Updated 3 months ago
- A program for assessing the T2T genome continuity☆92Updated 3 weeks ago