Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
☆109Jul 27, 2026Updated 3 weeks ago
Alternatives and similar repositories for pangenome
Users that are interested in pangenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 3 months ago
- the pangenome graph builder☆510Jul 24, 2026Updated 3 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆249Jul 23, 2026Updated 3 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆64Jul 27, 2026Updated 3 weeks ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 4 months ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- ☆46Apr 18, 2026Updated 4 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆79Aug 2, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Aug 9, 2026Updated last week
- ☆19May 10, 2023Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- alignment to variation graph inducer☆164Jul 29, 2026Updated 2 weeks ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- A multiscale pangenome browser☆30Jul 18, 2026Updated last month
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Updated this week
- Enumerating bubbles in pangenome graphs☆16Aug 11, 2026Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆117Jun 6, 2021Updated 5 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆409Aug 4, 2026Updated last week
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆50Jun 7, 2023Updated 3 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- bioinformatics toolkit in rust☆107Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assembly and binning of metagenomes☆314Updated this week
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 2 weeks ago
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 9 months ago
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated last month
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Pangenome-based genome inference☆177Aug 6, 2026Updated last week