lh3 / gfatoolsLinks
Tools for manipulating sequence graphs in the GFA and rGFA formats
☆237Updated last year
Alternatives and similar repositories for gfatools
Users that are interested in gfatools are comparing it to the libraries listed below
Sorting:
- Long read / genome alignment software☆297Updated 9 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Jasmine: SV Merging Across Samples☆223Updated 8 months ago
- Nanopore data assembler☆160Updated 3 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆156Updated 6 months ago
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆213Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- ☆208Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆198Updated this week
- Fast and accurately polish the genome generated by long reads.☆232Updated 7 months ago
- haplotypic duplication identification tool☆252Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆225Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆173Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- Pangenome-based genome inference☆139Updated last month
- software tools for haplotype assembly from sequence data☆223Updated 6 months ago
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆185Updated 2 years ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- VGP repository for the genome assembly working group☆194Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆298Updated 3 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆157Updated 4 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆186Updated 3 months ago
- A minimap2 frontend for PacBio native data formats☆202Updated 6 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆157Updated 2 months ago