Alternatives and similar repositories for gfatools

Users that are interested in gfatools are comparing it to the libraries listed below

• marbl / Winnowmap
  Long read / genome alignment software
  ☆290Updated 8 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆157Updated 3 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆217Updated 6 months ago
• wdecoster / chopper
  ☆200Updated 2 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆193Updated last week
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆227Updated 6 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆281Updated 8 months ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆201Updated 4 months ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆249Updated last year
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆193Updated last month
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆185Updated 2 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 2 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆170Updated last year
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆227Updated 11 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆215Updated 2 months ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆225Updated last month
• Benson-Genomics-Lab / TRF
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆178Updated 2 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆154Updated 4 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆202Updated last year
• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆210Updated 10 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆206Updated 3 weeks ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆155Updated last month
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆197Updated last week
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆286Updated this week
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆207Updated 2 years ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆214Updated 10 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆187Updated last year