jltsiren / gbwtgraph
GBWT-based handle graph
☆31Updated last week
Alternatives and similar repositories for gbwtgraph:
Users that are interested in gbwtgraph are comparing it to the libraries listed below
- ☆28Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- Construct a Physical Map from Linked Reads☆18Updated 10 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 9 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Convert HAL to VG☆21Updated 6 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated 11 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Generate interactive dotplot from mummer4 output using plotly☆26Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- General purpose utility related to GAF files☆22Updated 3 weeks ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated this week
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆36Updated 4 months ago
- JTK -- a regional diploid genome assembler☆24Updated 4 months ago
- ☆25Updated 3 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated last year