jltsiren / gbwtgraphLinks
GBWT-based handle graph
☆31Updated last week
Alternatives and similar repositories for gbwtgraph
Users that are interested in gbwtgraph are comparing it to the libraries listed below
Sorting:
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- ☆16Updated 3 years ago
- ☆28Updated 7 months ago
- Long-read aligner to pangenome graphs☆28Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated this week
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- ☆24Updated 3 months ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- General purpose utility related to GAF files☆29Updated last week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆23Updated 3 weeks ago
- Convert HAL to VG☆23Updated last year
- Hidden Markov Model based Copy number caller☆20Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆26Updated 4 years ago
- ☆14Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Updated 5 years ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago