Alternatives and similar repositories for structural:

Users that are interested in structural are comparing it to the libraries listed below

• mcfrith / dnarrange
  ☆16Updated 2 weeks ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 8 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 6 months ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• KolmogorovLab / minda
  ☆14Updated 7 months ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 10 months ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 4 months ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 2 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated this week
• medvedevgroup / vargeno
  Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
  ☆20Updated 5 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• jts / mbtools
  ☆13Updated last year
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆27Updated 6 months ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆21Updated 10 months ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 7 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆24Updated last month
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last month
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆28Updated 9 months ago
• KiddLab / QuicK-mer2
  ☆11Updated last year
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆18Updated 3 weeks ago
• GP2code / CNV-Finder
  Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
  ☆10Updated 2 months ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated 5 months ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆19Updated 2 months ago
• daihang16 / nubeamdedup
  Removing PCR duplicates for sequencing reads.
  ☆13Updated 4 years ago