fawaz-dabbaghieh / gfa_subgraphsLinks
Extracts subgraphs or components from a graph in GFA format
☆24Updated 10 months ago
Alternatives and similar repositories for gfa_subgraphs
Users that are interested in gfa_subgraphs are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 months ago
- ☆25Updated 2 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Differential k-mer analysis☆37Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- base-level dotplots from PAF alignments☆27Updated 2 weeks ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated 3 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆28Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆17Updated 8 months ago
- General purpose utility related to GAF files☆29Updated 3 weeks ago
- Long-read aligner to pangenome graphs☆27Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- ☆22Updated 3 weeks ago
- the pangenome graph evaluator☆28Updated 4 years ago
- Computational Pangenomics☆17Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- Reference bias measuring toolkit☆18Updated 5 months ago
- ☆28Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 6 months ago
- Genome Assembly 102☆15Updated 5 months ago