fawaz-dabbaghieh / gfa_subgraphsLinks
Extracts subgraphs or components from a graph in GFA format
☆23Updated 6 months ago
Alternatives and similar repositories for gfa_subgraphs
Users that are interested in gfa_subgraphs are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 11 months ago
- ☆19Updated last week
- ☆24Updated 6 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last week
- recompute GFA link overlaps☆25Updated 2 years ago
- Computational Pangenomics☆17Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- ☆32Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- the pangenome graph evaluator☆26Updated 4 years ago
- ☆23Updated 9 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- General purpose utility related to GAF files☆28Updated last week
- Differential k-mer analysis☆36Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- ☆21Updated 2 weeks ago
- Reference bias measuring toolkit☆18Updated last month
- Convert HAL to VG☆22Updated 9 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Variant call verification☆16Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago