fawaz-dabbaghieh / gfa_subgraphs
Extracts subgraphs or components from a graph in GFA format
☆23Updated 5 months ago
Alternatives and similar repositories for gfa_subgraphs:
Users that are interested in gfa_subgraphs are comparing it to the libraries listed below
- ☆17Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆23Updated 2 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Computational Pangenomics☆17Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- ☆32Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Genome size estimation from long read overlaps☆52Updated last week
- Differential k-mer analysis☆36Updated last year
- General purpose utility related to GAF files☆24Updated last week
- the pangenome graph evaluator☆26Updated 4 years ago
- ☆21Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- ☆28Updated 6 months ago
- ☆23Updated 8 months ago
- Align subreads to ccs reads☆13Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆20Updated 5 months ago
- Extracting paths from assembly graphs☆23Updated 11 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated 3 months ago
- Genome Assembly 102☆14Updated this week
- ☆12Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago