chfi / gfainjectLinks
☆18Updated 2 years ago
Alternatives and similar repositories for gfainject
Users that are interested in gfainject are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆27Updated 2 weeks ago
- General purpose utility related to GAF files☆29Updated last week
- ☆23Updated 5 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- ☆28Updated 6 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆28Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆25Updated last month
- ☆16Updated 4 years ago
- Long-read aligner to pangenome graphs☆29Updated last year
- the pangenome graph evaluator☆29Updated 4 years ago
- Utilities to detect and profile `het-kmers`☆12Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆15Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last week
- Prefix-renaming FASTA records really fast.☆17Updated last year
- A toolkit for exploring regions of variation in pangenomes☆13Updated last week
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆29Updated last month
- Convert HAL to VG☆23Updated last year
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated 2 weeks ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Updated 5 months ago
- ☆24Updated 5 months ago