Alternatives and similar repositories for gfainject:

Users that are interested in gfainject are comparing it to the libraries listed below

• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 10 months ago
• ldenti / palss
  ☆19Updated last month
• jmonlong / pangenome-evaluation
  Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map
  ☆10Updated 3 years ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 6 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• MoinSebi / gfa2bin
  ☆19Updated 4 months ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 11 months ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 9 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆24Updated this week
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated 8 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 7 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 3 months ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆12Updated 2 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated 2 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• davidebolo1993 / cosigt
  ☆17Updated last week
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆33Updated 2 weeks ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 4 years ago
• TurakhiaLab / panman
  Pangenome Mutation-Annotated Networks
  ☆13Updated 3 weeks ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆20Updated this week
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated 2 weeks ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆18Updated 4 years ago
• MoinSebi / gSV
  ☆11Updated 2 years ago