Alternatives and similar repositories for gfainject

Users that are interested in gfainject are comparing it to the libraries listed below

• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 2 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 5 months ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• ldenti / palss
  ☆22Updated last week
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated last month
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated last year
• MoinSebi / gfa2bin
  ☆25Updated last month
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆20Updated last month
• MoinSebi / gSV
  ☆11Updated 2 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 10 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 11 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated last week
• pangenome / pgge
  the pangenome graph evaluator
  ☆28Updated 4 years ago
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated 5 months ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated last month
• chfi / pafview
  ☆17Updated 7 months ago
• jmonlong / parakit
  Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.
  ☆10Updated 3 weeks ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 4 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆14Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated this week