chfi / gfainjectLinks
☆16Updated 2 years ago
Alternatives and similar repositories for gfainject
Users that are interested in gfainject are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 9 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆21Updated 3 weeks ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- General purpose utility related to GAF files☆28Updated last week
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- ☆24Updated 7 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- ☆16Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 3 months ago
- ☆28Updated 9 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Multiple sequence alignment of long tandem repeats☆19Updated 2 weeks ago
- the pangenome graph evaluator☆27Updated 4 years ago
- JTK -- a regional diploid genome assembler☆24Updated 8 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆15Updated this week
- De novo clustering of long transcript reads into genes☆15Updated 2 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- ☆32Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆14Updated 2 years ago
- Genome Assembly 102☆14Updated 2 months ago
- Importing vg json graphs to Python data structures.☆10Updated 4 years ago