Alternatives and similar repositories for dipcall

Users that are interested in dipcall are comparing it to the libraries listed below

• shilpagarg / DipAsm
  ☆79Updated 5 years ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆68Updated 7 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆105Updated 9 months ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆57Updated 2 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆127Updated 10 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last month
• MeHelmy / princess
  ☆81Updated 7 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆88Updated 3 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 3 weeks ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆127Updated 3 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆14Updated 9 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆57Updated 3 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆98Updated last year
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 6 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆96Updated 3 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 months ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• twolinin / longphase
  ☆119Updated last week
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆63Updated 2 weeks ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated 3 weeks ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆87Updated 2 weeks ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆39Updated 2 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated last month