Reference-based variant calling pipeline for a pair of phased haplotype assemblies
☆108Jun 6, 2021Updated 4 years ago
Alternatives and similar repositories for dipcall
Users that are interested in dipcall are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 3 months ago
- Yet another k-mer analyzer☆166Dec 30, 2025Updated 3 months ago
- ☆286Dec 29, 2025Updated 3 months ago
- Phased assembly variant caller☆139Dec 4, 2024Updated last year
- Pangenome-based genome inference☆165Dec 1, 2025Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 8 months ago
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆239Feb 10, 2026Updated 2 months ago
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 8 months ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 5 months ago
- Structural variant toolkit for VCFs☆404Mar 21, 2026Updated 3 weeks ago
- A complete diploid human genome☆145Mar 27, 2026Updated 2 weeks ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆102Apr 22, 2024Updated last year
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆165Feb 26, 2025Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- alignment to variation graph inducer☆158Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆48Feb 23, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Mar 11, 2026Updated last month
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆149Jul 7, 2025Updated 9 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆764Mar 18, 2025Updated last year