lh3 / dipcallLinks
Reference-based variant calling pipeline for a pair of phased haplotype assemblies
☆102Updated 4 years ago
Alternatives and similar repositories for dipcall
Users that are interested in dipcall are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆102Updated 6 months ago
- Copy number caller for long read data including SNV utilization☆65Updated 4 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- ☆77Updated 5 years ago
- Simple pileup-based variant caller☆91Updated 3 months ago
- Phased assembly variant caller☆123Updated 8 months ago
- Mapping pipeline for data generated using Arima-HiC☆79Updated last year
- ☆81Updated 5 months ago
- SRF: Satellite Repeat Finder☆97Updated last year
- A list of software for pangenomics☆121Updated 2 weeks ago
- Collection of tools for the analysis of CpG data☆89Updated last month
- Toolkit for calling structural variants using short or long reads☆107Updated this week
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆122Updated last week
- Fast and accurate coordinate conversion between assemblies☆114Updated 4 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- A program to call variants from genome alignment☆81Updated 3 months ago
- ☆116Updated 3 months ago
- Pangenome-based genome inference☆135Updated last week
- Application of pan-genome for population☆108Updated 9 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 2 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A program for assessing the T2T genome continuity☆83Updated last month
- ☆44Updated 8 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Call select base modifications in PacBio HiFi reads☆10Updated 6 months ago
- Structural Variant Identification Method using Genome Assemblies☆121Updated 2 years ago
- Variant annotation and merging pipeline☆39Updated 2 weeks ago