lh3 / dipcallLinks
Reference-based variant calling pipeline for a pair of phased haplotype assemblies
☆100Updated 3 years ago
Alternatives and similar repositories for dipcall
Users that are interested in dipcall are comparing it to the libraries listed below
Sorting:
- ☆80Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- ☆76Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆52Updated 2 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A program for assessing the T2T genome continuity☆75Updated last month
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- Structural Variant Index☆74Updated 5 months ago
- Variant annotation and merging pipeline☆34Updated this week
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- SRF: Satellite Repeat Finder☆96Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- ☆48Updated 9 months ago
- ☆28Updated 3 weeks ago
- Simple pileup-based variant caller☆90Updated last month
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- Phased assembly variant caller☆116Updated 6 months ago