lh3 / dipcall
Reference-based variant calling pipeline for a pair of phased haplotype assemblies
☆93Updated 3 years ago
Related projects: ⓘ
- Phased assembly variant caller☆87Updated this week
- Pipeline to convert a haploid assembly into diploid☆89Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆70Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆63Updated last year
- Collection of tools for the analysis of CpG data☆70Updated 6 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆44Updated 3 years ago
- ☆79Updated 4 months ago
- Pangenome-based genome inference☆103Updated last week
- A tool for somatic structural variant calling using long reads☆99Updated this week
- Toolkit for calling structural variants using short or long reads☆91Updated last week
- Somatic structural variant caller for long-read data☆43Updated 3 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆70Updated 3 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆59Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆106Updated 7 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆35Updated 5 months ago
- Copy number caller for long read data including SNV utilization☆50Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆80Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated 11 months ago
- Error correction of ONT transcript reads☆57Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆55Updated 6 months ago
- Splitting of sequence reads by internal adapter sequence search☆48Updated last year
- Fast and accurate coordinate conversion between assemblies☆106Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆100Updated this week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 3 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆63Updated last month
- ☆47Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆58Updated 3 years ago
- ☆56Updated 2 months ago