SouthGreenPlatform / panacheLinks
Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
☆45Updated 2 years ago
Alternatives and similar repositories for panache
Users that are interested in panache are comparing it to the libraries listed below
Sorting:
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
 - Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
 - Improved Phased Assembler☆28Updated 3 years ago
 - Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
 - ☆45Updated 2 weeks ago
 - GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
 - extract MSAs from genome variation graphs☆33Updated 5 years ago
 - CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
 - Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
 - Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
 - This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
 - ☆29Updated 2 years ago
 - In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
 - Implementation of ToL genome assembly workflows☆23Updated last week
 - Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
 - Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
 - Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
 - A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
 - A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated 2 weeks ago
 - base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
 - This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 11 months ago
 - convert PAF format to CHAIN format☆33Updated 5 months ago
 - Statistics and analysis for variation graphs☆46Updated 10 months ago
 - PGR-TK: Pangenome Research Tool Kit☆20Updated 7 months ago
 - Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
 - ☆44Updated 3 years ago
 - MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
 - Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
 - Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
 - Python wrapper for wavefront alignment using WFA2-lib☆37Updated 11 months ago