Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
☆47Jun 7, 2023Updated 2 years ago
Alternatives and similar repositories for panache
Users that are interested in panache are comparing it to the libraries listed below
Sorting:
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- ☆21Nov 1, 2019Updated 6 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- ☆11Feb 20, 2024Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆60Feb 25, 2026Updated last week
- ☆61Jun 14, 2021Updated 4 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆104Nov 20, 2025Updated 3 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Modular Multi-scale Integrated Genome Graph Browser☆96Feb 18, 2026Updated 2 weeks ago
- GBWT-based handle graph☆31Feb 11, 2026Updated 3 weeks ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆234Feb 10, 2026Updated 3 weeks ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 5 years ago
- ☆41Feb 15, 2026Updated 2 weeks ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆122Jan 20, 2026Updated last month
- ☆18May 10, 2023Updated 2 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆104Jul 23, 2024Updated last year
- ☆20Dec 13, 2023Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- Phased structural variant discovery in pangenomes☆39Dec 9, 2025Updated 2 months ago