SouthGreenPlatform / panacheLinks
Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
☆45Updated 2 years ago
Alternatives and similar repositories for panache
Users that are interested in panache are comparing it to the libraries listed below
Sorting:
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- ☆45Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 2 months ago
- implicit pangenome graph☆85Updated last week
- Differential k-mer analysis☆39Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- ☆29Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- Implementation of ToL genome assembly workflows☆24Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- PGR-TK: Pangenome Research Tool Kit☆21Updated 9 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago