Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
☆49Jun 7, 2023Updated 3 years ago
Alternatives and similar repositories for panache
Users that are interested in panache are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 3 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- ☆21Nov 1, 2019Updated 6 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Modular Multi-scale Integrated Genome Graph Browser☆98Apr 19, 2026Updated 2 months ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated last week
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- ☆46Apr 18, 2026Updated 2 months ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- GBWT-based handle graph☆35Jun 17, 2026Updated last week
- ☆64Jun 14, 2021Updated 5 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- ☆29Sep 28, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246May 1, 2026Updated last month
- alignment to variation graph inducer☆161Jun 17, 2026Updated last week
- A collaborative notebook for genes and genomes☆13Jun 21, 2026Updated last week
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆26Updated this week
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 4 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 2 months ago
- De novo construction of isoforms from long-read data☆36Jun 10, 2025Updated last year
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for evaluating long-read de novo assembly results☆54Aug 25, 2024Updated last year
- generating hardware accelerators for pangenomic graph queries☆43May 26, 2026Updated last month
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Neptune: Genomic Signature Discovery☆21May 1, 2026Updated last month
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- 🪡Correct and scaffold assemblies using long reads☆58Apr 1, 2026Updated 2 months ago