SouthGreenPlatform / panache
Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
☆44Updated last year
Related projects ⓘ
Alternatives and complementary repositories for panache
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- Statistics and analysis for variation graphs☆31Updated this week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month
- Differential k-mer analysis☆33Updated 9 months ago
- Improved Phased Assembler☆28Updated 2 years ago
- implicit pangenome graph☆44Updated 3 weeks ago
- ☆40Updated this week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- ☆39Updated last week
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆24Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Colinear block visualisation tool☆30Updated 10 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- ☆21Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆27Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- ☆17Updated last month
- assembly evaluation tool☆34Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- transposable element typing pipeline☆17Updated 8 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Convert HAL to VG☆21Updated 3 months ago
- Find Unique genomic Regions☆29Updated this week
- ☆26Updated 3 months ago