Alternatives and similar repositories for waragraph:

Users that are interested in waragraph are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• chfi / pafview
  ☆17Updated 2 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 3 years ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆16Updated 3 weeks ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆57Updated last month
• mbhall88 / psdm
  Compute a pairwise SNP distance matrix from one or two alignment(s)
  ☆24Updated 6 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 3 weeks ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 3 years ago
• a-ludi / dentist
  Close assembly gaps using long-reads at high accuracy.
  ☆48Updated last year
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 4 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆28Updated 3 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 3 years ago
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆33Updated this week
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆28Updated 8 months ago
• wdecoster / kyber
  ☆21Updated 3 months ago
• ShunOuchi / GreenHill
  De novo chromosome-level scaffolding and phasing tool using Hi-C
  ☆27Updated last month
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated last week
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 7 months ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆38Updated 5 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated last month
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago