chfi / waragraphLinks
☆28Updated last year
Alternatives and similar repositories for waragraph
Users that are interested in waragraph are comparing it to the libraries listed below
Sorting:
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- ☆17Updated 9 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆32Updated 2 years ago
- GBWT in Rust☆43Updated 7 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- ☆26Updated 3 months ago
- Fast approximate string searching☆74Updated this week
- implicit pangenome graph☆78Updated last week
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- Extracting paths from assembly graphs☆24Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- A read alignment visualization library for long reads☆10Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 5 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆13Updated last week
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- De novo clustering of long transcript reads into genes☆17Updated 6 months ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15Updated 6 months ago
- k-mers and the like☆22Updated 2 weeks ago
- ☆17Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆56Updated this week