chfi / waragraphLinks
☆29Updated last year
Alternatives and similar repositories for waragraph
Users that are interested in waragraph are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated 3 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆39Updated 5 months ago
- ☆18Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆14Updated last month
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated 3 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- implicit pangenome graph☆86Updated 2 weeks ago
- ☆17Updated 2 years ago
- Extracting paths from assembly graphs☆24Updated last year
- De novo clustering of long transcript reads into genes☆16Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Updated last year
- ☆28Updated 4 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 6 months ago
- the pangenome graph evaluator☆29Updated 4 years ago
- ☆15Updated 4 years ago
- Fast and exact gap-affine partial order alignment☆57Updated last month
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- GBWT in Rust☆43Updated 2 weeks ago
- Multiple sequence alignment of long tandem repeats☆25Updated 4 months ago