Alternatives and similar repositories for waragraph

Users that are interested in waragraph are comparing it to the libraries listed below

• chfi / pafview
  ☆17Updated 5 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• mbhall88 / psdm
  Compute a pairwise SNP distance matrix from one or two alignment(s)
  ☆25Updated 10 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆30Updated 2 months ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆36Updated 4 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• HudsonAlpha / fmlrc2
  ☆48Updated 2 years ago
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 4 years ago
• delehef / asgart
  A genome-scale, fast, and precise segmental duplications mapping tool
  ☆34Updated 10 months ago
• chfi / rs-handlegraph
  Rust implementation of VG handle graph
  ☆20Updated last year
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆20Updated 4 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 weeks ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated 2 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 5 months ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 3 months ago
• a-ludi / dentist
  Close assembly gaps using long-reads at high accuracy.
  ☆48Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• pangenome / impg
  implicit pangenome graph
  ☆65Updated last week
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆30Updated this week