☆30Mar 27, 2024Updated 2 years ago
Alternatives and similar repositories for waragraph
Users that are interested in waragraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Feb 26, 2026Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆18Jan 29, 2025Updated last year
- A multiscale pangenome browser☆29Updated this week
- ☆15Jun 29, 2021Updated 4 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆19May 10, 2023Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- implicit pangenome graph☆98Updated this week
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆239Feb 10, 2026Updated 2 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆42Feb 15, 2026Updated last month
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated 2 weeks ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated last month
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆62Sep 15, 2025Updated 6 months ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 8 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Updated this week
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year