☆31Mar 27, 2024Updated 2 years ago
Alternatives and similar repositories for waragraph
Users that are interested in waragraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- online variation graph induction☆12Oct 21, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆18Jan 29, 2025Updated last year
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated last week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Dec 9, 2022Updated 3 years ago
- Multiple sequence alignment of long tandem repeats☆34Oct 9, 2026Updated 3 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 6 months ago
- ☆13Dec 10, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated 3 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆12Updated this week
- ☆19May 10, 2023Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆110Oct 7, 2026Updated 3 weeks ago
- ☆63Sep 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆55Jul 29, 2026Updated 3 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- Pangenome diversity from k-mers or genes☆13Sep 22, 2026Updated last month