Integrate multiple genome assemblies into a pangenome graph
☆37Jun 9, 2022Updated 3 years ago
Alternatives and similar repositories for bovine-graphs
Users that are interested in bovine-graphs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆19May 10, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Pangenome-based genome inference☆165Dec 1, 2025Updated 4 months ago
- implicit pangenome graph☆98Apr 9, 2026Updated last week
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- Application of pan-genome for population☆117Oct 26, 2025Updated 5 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 10 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- tomato graph pangenome☆89Dec 13, 2022Updated 3 years ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- ☆30Mar 4, 2022Updated 4 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆241Feb 10, 2026Updated 2 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 6 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 11 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Synteny Mapping and Analysis Program☆30Apr 1, 2026Updated 2 weeks ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 11 months ago
- ☆19Apr 24, 2022Updated 3 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Nov 19, 2025Updated 4 months ago