AnimalGenomicsETH / bovine-graphsLinks
Integrate multiple genome assemblies into a pangenome graph
☆35Updated 3 years ago
Alternatives and similar repositories for bovine-graphs
Users that are interested in bovine-graphs are comparing it to the libraries listed below
Sorting:
- ☆44Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- ☆32Updated last year
- ☆31Updated 6 years ago
- Draw a dot plot from a paf alignment☆37Updated 4 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- ☆38Updated 3 weeks ago
- ☆31Updated 9 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- SV calling for diploid assemblies☆30Updated last year
- ☆21Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28Updated 4 years ago
- A genome assembly assessment pipeline.☆38Updated 2 years ago
- ☆38Updated 3 months ago
- ☆29Updated last week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Identification of transposable element families from pangenome polymorphisms☆55Updated 7 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- ☆24Updated 2 months ago