AnimalGenomicsETH / bovine-graphs

Related projects ⓘ

Alternatives and complementary repositories for bovine-graphs

• vgteam / giraffe-sv-paper
  ☆40Updated 6 months ago
• baozg / phased-assembly-check
  ☆28Updated 2 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆37Updated 3 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆35Updated last year
• simon19891216 / CentIER
  ☆21Updated 2 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 4 years ago
• mrvollger / NucFreq
  ☆32Updated 8 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆32Updated last year
• HuffordLab / GenomeQC
  ☆32Updated 3 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆23Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆35Updated last year
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆36Updated last week
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 3 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• tangerzhang / calc_switchErr
  ☆24Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆28Updated last week
• maickrau / ribotin
  ☆30Updated this week
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆36Updated 11 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆53Updated 6 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆33Updated last month
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 2 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• i10labtitech / GINGER
  ☆23Updated 9 months ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆54Updated 2 months ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆23Updated 5 months ago