Integrate multiple genome assemblies into a pangenome graph
☆37Jun 9, 2022Updated 3 years ago
Alternatives and similar repositories for bovine-graphs
Users that are interested in bovine-graphs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- use variant nesting information to flter overlapping sites from vg deconstruct output☆33Jun 12, 2025Updated 11 months ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated last year
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 9 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Pangenome-based genome inference☆169May 7, 2026Updated 2 weeks ago
- implicit pangenome graph☆105Updated this week
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆38Oct 29, 2025Updated 6 months ago
- Application of pan-genome for population☆118Oct 26, 2025Updated 7 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 11 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 8 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- tomato graph pangenome☆93Dec 13, 2022Updated 3 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆244May 1, 2026Updated 3 weeks ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated 3 weeks ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Synteny Mapping and Analysis Program☆30May 8, 2026Updated 2 weeks ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆37Apr 28, 2026Updated 3 weeks ago
- ☆19Apr 24, 2022Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Sep 5, 2025Updated 8 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆131Apr 17, 2026Updated last month