Alternatives and similar repositories for bovine-graphs

Users that are interested in bovine-graphs are comparing it to the libraries listed below

• baozg / phased-assembly-check
  ☆30Updated 5 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆39Updated 4 years ago
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 3 months ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆30Updated 2 months ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• mrvollger / NucFreq
  ☆35Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated 3 weeks ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆43Updated 8 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆23Updated this week
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆27Updated 4 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 10 months ago
• farhangus / Sniffles2_plot
  ☆30Updated 10 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• sudmantlab / amylase_diversity_project
  ☆16Updated 6 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• simon19891216 / CentIER
  ☆32Updated 9 months ago
• caaswxb / SRY
  SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.
  ☆18Updated last year
• maickrau / ribotin
  ☆35Updated this week
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• i10labtitech / GINGER
  ☆28Updated last year