Minimum Bait Cover Toolkit Syotti.
☆15Jan 22, 2025Updated last year
Alternatives and similar repositories for syotti
Users that are interested in syotti are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Mar 13, 2025Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- Pan-Genomic Matching Statistics☆56Apr 3, 2024Updated 2 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated this week
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 3 months ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- Fast Approximate Pattern Matching using Search Schemes☆16Mar 27, 2026Updated last month
- A Rust crate for evaluating poker hands☆16Jun 15, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 9 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 2 weeks ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 9 months ago
- ☆10Feb 23, 2024Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆16Nov 19, 2025Updated 5 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 6 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆52Mar 26, 2026Updated last month
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 weeks ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Compacted and colored de Bruijn graph construction and querying☆97Mar 6, 2026Updated 2 months ago
- ☆13Dec 3, 2024Updated last year
- ☆24Aug 25, 2025Updated 8 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆40Updated this week