ASLeonard / pandrawerLinks
Everything but the kitchen sink
☆11Updated 10 months ago
Alternatives and similar repositories for pandrawer
Users that are interested in pandrawer are comparing it to the libraries listed below
Sorting:
- Genome Assembly 102☆16Updated 7 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 3 months ago
- base-level dotplots from PAF alignments☆28Updated 2 months ago
- ☆13Updated 6 months ago
- ☆12Updated 8 years ago
- ☆23Updated 3 months ago
- Phasing reads with secondary alignments☆21Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆11Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- ☆17Updated 5 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆23Updated last week
- ☆17Updated 10 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆20Updated 2 weeks ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆28Updated 4 months ago
- defusion☆14Updated 4 years ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 4 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated 2 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆18Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- Consensus genome annotation using OMA☆27Updated 5 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆18Updated 4 months ago
- recompute GFA link overlaps☆25Updated 3 years ago