Alternatives and similar repositories for pandrawer:

Users that are interested in pandrawer are comparing it to the libraries listed below

• marbl / training
  Genome Assembly 102
  ☆14Updated 3 months ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 6 months ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆12Updated 2 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 9 months ago
• davidebolo1993 / cosigt
  ☆17Updated last week
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 7 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 10 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• ldenti / palss
  ☆19Updated this week
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated 2 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 4 months ago
• MoinSebi / gfa2bin
  ☆19Updated 4 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 9 months ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆9Updated 6 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• MoritzBlumer / winpca
  WinPCA. A package for windowed principal component analysis.
  ☆12Updated 2 months ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆14Updated 2 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆23Updated 4 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated 7 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• hitbc / gcSV
  ☆17Updated last month
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆18Updated 3 weeks ago
• at-cg / RAFT
  ☆23Updated 7 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 4 months ago
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆16Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago