Alternatives and similar repositories for pandrawer

Users that are interested in pandrawer are comparing it to the libraries listed below

• Maize-Genetics-and-Genomics-Database / PanEffect
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Updated last year
• SJTU-CGM / PPanG
  a precise pangenome browser combining linear and graph-based pan-genome
  ☆11Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 2 weeks ago
• marbl / training
  Genome Assembly 102
  ☆15Updated 4 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated last month
• mcfrith / local-rearrangements
  ☆12Updated 7 years ago
• marschall-lab / strand-seq-graph-phasing
  ☆11Updated 3 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 9 months ago
• ldenti / palss
  ☆21Updated 2 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆20Updated 8 months ago
• davidebolo1993 / cosigt
  ☆20Updated last week
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 2 months ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆15Updated 2 years ago
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated 3 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆18Updated 3 months ago
• ERGA-consortium / pipelines
  ☆16Updated 2 months ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆24Updated 2 weeks ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆16Updated 3 weeks ago
• MoinSebi / gfa2bin
  ☆25Updated 3 weeks ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆18Updated 10 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 11 months ago
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated 4 months ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated last month
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 2 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆26Updated 2 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆26Updated 2 months ago
• chfi / pafview
  ☆17Updated 6 months ago