Prefix-renaming FASTA records really fast.
☆18Jun 26, 2024Updated 2 years ago
Alternatives and similar repositories for fastix
Users that are interested in fastix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- ☆19May 10, 2023Updated 3 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- ☆10Oct 16, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year
- ☆24Apr 15, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CGM 主站☆11Jun 8, 2026Updated 4 months ago
- Pangenome-based genome inference☆184Oct 26, 2026Updated last week
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- Graph Variant Benchmarking for the HPRC2☆11May 26, 2026Updated 5 months ago
- Complete assemblies of non-human primate genomes☆63May 20, 2025Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- ☆17Jan 5, 2021Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆32Oct 7, 2026Updated 3 weeks ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 6 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated 2 months ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 4 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- tutorial on pggb☆40Jan 13, 2025Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆36Aug 18, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 5 years ago
- Pangenome explorations☆13Apr 8, 2026Updated 6 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆63Sep 6, 2025Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆12Jan 8, 2026Updated 9 months ago