ekg / fastixLinks
Prefix-renaming FASTA records really fast.
☆16Updated last year
Alternatives and similar repositories for fastix
Users that are interested in fastix are comparing it to the libraries listed below
Sorting:
- ☆25Updated 2 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- ☆28Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Differential k-mer analysis☆37Updated last year
- General purpose utility related to GAF files☆29Updated last month
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- base-level dotplots from PAF alignments☆27Updated 3 weeks ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Convert HAL to VG☆22Updated last year
- Genome Assembly 102☆14Updated 5 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆18Updated last year
- Phasing reads with secondary alignments☆20Updated 10 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Tandem repeat genotyping with long reads☆30Updated 2 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- ☆12Updated 4 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago