We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.
☆32Jan 3, 2022Updated 4 years ago
Alternatives and similar repositories for GenomeSyn
Users that are interested in GenomeSyn are comparing it to the libraries listed below
Sorting:
- ☆16Jan 14, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆41Jun 8, 2023Updated 2 years ago
- ☆44Jul 23, 2025Updated 7 months ago
- ☆21Dec 8, 2025Updated 2 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- ☆21Jan 13, 2026Updated last month
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 7 years ago
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 8 months ago
- Application of pan-genome for population☆116Oct 26, 2025Updated 4 months ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- ☆86Jul 12, 2024Updated last year
- Neural network classification of TE☆97Oct 9, 2025Updated 4 months ago
- ☆17Feb 11, 2026Updated 3 weeks ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆60Dec 20, 2025Updated 2 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- High-precision TE Annotator☆151Dec 4, 2025Updated 3 months ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 4 months ago
- test repository☆29Jul 6, 2023Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 6 months ago
- Draw a dot plot from a paf alignment☆38Sep 18, 2025Updated 5 months ago
- ☆37Feb 22, 2023Updated 3 years ago
- This is the standalone version of the EviAnn pipeline☆139Feb 5, 2026Updated last month
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Jun 3, 2025Updated 9 months ago
- ☆28Oct 20, 2023Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Oct 29, 2025Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- ☆27Aug 29, 2025Updated 6 months ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆218Jul 4, 2025Updated 8 months ago
- ☆15Aug 6, 2018Updated 7 years ago