Eco-Flow / syntenyLinks
A Nextflow pipeline for running synteny analysis.
☆15Updated 2 weeks ago
Alternatives and similar repositories for synteny
Users that are interested in synteny are comparing it to the libraries listed below
Sorting:
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ☆16Updated this week
- ☆20Updated last year
- Implementation of ToL genome assembly workflows☆20Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- Consensus genome annotation using OMA☆24Updated last month
- Variant call verification☆16Updated 3 weeks ago
- Surveillance of pathogens using population genomics and sequencing☆24Updated this week
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 2 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆19Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated this week
- Improved Phased Assembler☆28Updated 3 years ago
- Read contamination removal☆25Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 5 months ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 6 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Genome size estimation from long read overlaps☆56Updated last month
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 11 months ago
- ☆14Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- ☆14Updated last year
- ☆27Updated 3 years ago