Eco-Flow / syntenyLinks
A Nextflow pipeline for running synteny analysis.
☆16Updated 4 months ago
Alternatives and similar repositories for synteny
Users that are interested in synteny are comparing it to the libraries listed below
Sorting:
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Read contamination removal☆25Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- ☆20Updated last year
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Implementation of ToL genome assembly workflows☆23Updated this week
- fastest GTF/GFF-to-BED converter chilling around☆28Updated 2 weeks ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- ☆45Updated 2 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Reference genome quality scores☆21Updated 4 years ago
- transposable element typing pipeline☆19Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated this week
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆16Updated this week
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆19Updated last year
- ☆18Updated last year
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- ☆14Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆23Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago