Eco-Flow / synteny
A Nextflow pipeline for running synteny analysis.
☆14Updated last week
Alternatives and similar repositories for synteny:
Users that are interested in synteny are comparing it to the libraries listed below
- Implementation of ToL genome assembly workflows☆20Updated last week
- ☆16Updated 2 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆30Updated 3 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆26Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆19Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆18Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆37Updated 2 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆24Updated this week
- Consensus genome annotation using OMA☆23Updated 4 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- ☆23Updated 8 months ago
- ☆17Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆24Updated this week
- A Rust implementation of sliding window stats over fastas.☆15Updated last year
- Better Alignments with Translated HMMER☆19Updated last week
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆13Updated 3 weeks ago
- ☆41Updated last month
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 5 months ago
- Surveillance of pathogens using population genomics and sequencing☆22Updated this week
- ☆20Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 10 months ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year