A Nextflow pipeline for running synteny analysis.
☆16Apr 24, 2026Updated last month
Alternatives and similar repositories for synteny
Users that are interested in synteny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆16May 22, 2026Updated last week
- Compare the quality of multiple genomes, along with their annotations.☆20May 7, 2026Updated 3 weeks ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26May 8, 2026Updated 3 weeks ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 months ago
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆17May 22, 2026Updated last week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆34Updated this week
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19May 19, 2026Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- ☆33Nov 2, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 8 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆23May 16, 2026Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆72Nov 19, 2025Updated 6 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Implementation of ToL genome assembly workflows☆28May 11, 2026Updated 2 weeks ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- De novo construction of isoforms from long-read data☆36Jun 10, 2025Updated 11 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- ☆17May 4, 2026Updated 3 weeks ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated last month
- UFCG: Universal Fungal Core Genes☆36Jul 29, 2025Updated 10 months ago
- A Rust implementation of sliding window stats over fastas.☆15Sep 2, 2025Updated 8 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆106Apr 30, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A list of awesome bioinformatics communities☆25Oct 3, 2024Updated last year
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated 8 months ago
- Gene Ontology subgraph visualizations☆20Jan 6, 2026Updated 4 months ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆104May 20, 2026Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆52Apr 1, 2026Updated last month
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated last year