pangenome / pggeLinks
the pangenome graph evaluator
☆29Updated 4 years ago
Alternatives and similar repositories for pgge
Users that are interested in pgge are comparing it to the libraries listed below
Sorting:
- Statistics and analysis for variation graphs☆45Updated 10 months ago
- ☆28Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- ☆28Updated last year
- Differential k-mer analysis☆37Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- ☆25Updated 2 months ago
- ☆38Updated 3 weeks ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆22Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- SV calling for diploid assemblies☆29Updated last year
- General purpose utility related to GAF files☆29Updated last month
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Extracting paths from assembly graphs☆24Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Convert HAL to VG☆22Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- FastK based version of Merqury☆28Updated last month