Alternatives and similar repositories for readfish:

Users that are interested in readfish are comparing it to the libraries listed below

• wdecoster / chopper
  ☆181Updated last week
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 6 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆180Updated 3 weeks ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆114Updated last week
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆185Updated last month
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆190Updated last month
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆210Updated 8 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆198Updated 7 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆270Updated last week
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆219Updated 2 months ago
• jtlovell / GENESPACE
  ☆200Updated 2 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆198Updated last year
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆163Updated last week
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆144Updated 2 weeks ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆281Updated 4 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆201Updated 2 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆325Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆148Updated 3 years ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 4 years ago
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆168Updated 6 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆136Updated 3 years ago
• epi2me-labs / wf-human-variation
  ☆118Updated 2 weeks ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆113Updated 2 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆209Updated 3 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆179Updated 3 weeks ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆145Updated last year
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆267Updated last month
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆278Updated 10 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆134Updated 4 years ago