KleistLab / NanoPore_dRNASeqLinks
Codes and results from ONT dRNA benchmarking
☆11Updated 2 years ago
Alternatives and similar repositories for NanoPore_dRNASeq
Users that are interested in NanoPore_dRNASeq are comparing it to the libraries listed below
Sorting:
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Realtime base modification frequency tool☆13Updated 2 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 9 months ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆18Updated 4 months ago
- ☆33Updated 3 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆22Updated last week
- Nanopore direct RNA basecaller☆11Updated 3 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Updated 3 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 9 months ago
- Master of Pores 2☆23Updated last year
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆35Updated 3 weeks ago
- ☆12Updated last year
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- ☆27Updated 3 months ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- WDL workflows for variant calling and assembly using ONT☆38Updated 2 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆33Updated last week
- A library and tool for accessing remote BLOW5 files.☆24Updated 2 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆14Updated 6 months ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated 2 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- ☆29Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 3 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago