A fully convolutional architecture for basecalling nanopore RNA sequencing data
☆11Sep 26, 2024Updated last year
Alternatives and similar repositories for RODAN
Users that are interested in RODAN are comparing it to the libraries listed below
Sorting:
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- ☆30Jul 28, 2025Updated 7 months ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 3 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- ☆24Dec 24, 2022Updated 3 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Feb 16, 2026Updated 2 weeks ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- ☆13Jun 10, 2025Updated 8 months ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 6 months ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated 11 months ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Jan 22, 2026Updated last month
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 5 months ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 3 months ago
- ☆14Oct 5, 2023Updated 2 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated 6 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 2 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆23Nov 27, 2024Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- a tool for simulating nanopore raw signal data☆73Jan 30, 2026Updated last month
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated 9 months ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆10Jun 12, 2024Updated last year
- The biggest collection of educational resources of United International University☆10Nov 11, 2022Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- A bioinformatics tool for working with modified bases☆252Jan 19, 2026Updated last month
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆35Oct 17, 2025Updated 4 months ago
- RILseq computational protocol☆11Apr 3, 2022Updated 3 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- ☆38Dec 29, 2025Updated 2 months ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Feb 11, 2026Updated 2 weeks ago