biodlab / RODAN
A fully convolutional architecture for basecalling nanopore RNA sequencing data
☆11Updated 7 months ago
Alternatives and similar repositories for RODAN:
Users that are interested in RODAN are comparing it to the libraries listed below
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 2 months ago
- ☆14Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆13Updated 6 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 9 months ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- ☆23Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆74Updated 2 weeks ago
- Xron - an omni basecaller for ONT reads.☆21Updated 5 months ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆14Updated 2 weeks ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 11 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆29Updated 4 years ago
- Tiberius is a deep learning gene finder.☆54Updated last week
- ☆20Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆115Updated 2 months ago
- GUI for inspecting POD5 files☆27Updated 4 months ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- ☆58Updated 3 months ago
- Yet another nanopore modification comparison tool☆12Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 5 months ago