A fully convolutional architecture for basecalling nanopore RNA sequencing data
☆12Sep 26, 2024Updated last year
Alternatives and similar repositories for RODAN
Users that are interested in RODAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 11 months ago
- ☆31Jul 28, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆25Dec 24, 2022Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated last year
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- Realtime base modification frequency tool☆15Sep 16, 2025Updated last year
- ☆14Jun 10, 2025Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆18Jun 4, 2026Updated 3 months ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆40Aug 2, 2024Updated 2 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated last month
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16Sep 9, 2026Updated last week
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- ☆13Oct 5, 2023Updated 2 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- The biggest collection of educational resources of United International University☆10Nov 11, 2022Updated 3 years ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing