VBZ compression plugin for nanopore signal data
☆43Apr 7, 2025Updated 10 months ago
Alternatives and similar repositories for vbz_compression
Users that are interested in vbz_compression are comparing it to the libraries listed below
Sorting:
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Python client library for Guppy☆32Aug 15, 2022Updated 3 years ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- ☆29Oct 17, 2023Updated 2 years ago
- ☆27Nov 14, 2025Updated 3 months ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- Read Until client library for Nanopore Sequencing☆109Sep 25, 2024Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆18Jul 22, 2025Updated 7 months ago
- Pod5: a high performance file format for nanopore reads.☆172Nov 19, 2025Updated 3 months ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Oct 2, 2022Updated 3 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆103Jan 28, 2026Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆40Jan 7, 2026Updated last month
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 10 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Feb 6, 2024Updated 2 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 3 years ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Research release basecalling models and configurations☆117May 21, 2025Updated 9 months ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Sep 11, 2025Updated 5 months ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year