Alternatives and similar repositories for vbz_compression:

Users that are interested in vbz_compression are comparing it to the libraries listed below

• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated last week
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 3 years ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆99Updated last year
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆43Updated 2 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated last month
• nanoporetech / pore-c
  Pore-C support
  ☆53Updated 2 years ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆63Updated 3 weeks ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆48Updated this week
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆54Updated 2 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 5 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆53Updated 10 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• CASTLE-Panel / castle
  CAncer Standards Long-read Evaluation
  ☆25Updated 2 months ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago