jordisr / poreoverLinks
Nanopore basecalling and consensus decoding
☆46Updated 3 years ago
Alternatives and similar repositories for poreover
Users that are interested in poreover are comparing it to the libraries listed below
Sorting:
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- Predictive kmer models for development use☆62Updated 2 years ago
- Fast5 API provided by ONT Research☆22Updated 3 years ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆100Updated 3 years ago
- ☆49Updated 11 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Very fast ONT basecaller☆52Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆129Updated last week
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 6 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆73Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated last month
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆32Updated last month
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- a tool for simulating nanopore raw signal data☆70Updated 3 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆69Updated 11 months ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago