Nanopore basecalling and consensus decoding
☆46Jul 22, 2022Updated 3 years ago
Alternatives and similar repositories for poreover
Users that are interested in poreover are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆430Feb 20, 2026Updated last month
- Very fast ONT basecaller☆52Jun 17, 2022Updated 3 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- ☆14Apr 12, 2023Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- ☆26Dec 29, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆173Dec 26, 2023Updated 2 years ago
- Nanopore sequence read simulator☆294Mar 12, 2026Updated 2 weeks ago
- ☆21Mar 26, 2019Updated 7 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Feb 25, 2022Updated 4 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated last week
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a tool for simulating nanopore raw signal data☆75Mar 4, 2026Updated 3 weeks ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 11 months ago
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- Training models for basecalling Oxford Nanopore reads☆115Jan 13, 2022Updated 4 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Bioinformatics Open Source Sequence machine☆32Mar 21, 2026Updated last week
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆49Nov 7, 2024Updated last year
- Reader and writer of HDF5 files☆18Jul 15, 2017Updated 8 years ago
- reference-based long read assemblies of bacterial genomes☆51Aug 9, 2021Updated 4 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago