Alternatives and similar repositories for slow5-dorado

Users that are interested in slow5-dorado are comparing it to the libraries listed below

• gjun / muCNV
  ☆20Updated last year
• hasindu2008 / sigtk
  A simple toolkit for manipulating nanopore signal data
  ☆18Updated last year
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆49Updated 7 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆45Updated last month
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆27Updated 11 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 6 months ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆21Updated 11 months ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 2 years ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• TimD1 / nPoRe
  nPoRe: n-Polymer Realigner for improved pileup-based variant calling
  ☆18Updated 3 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆44Updated last month
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated this week
• PacificBiosciences / pbfusion
  ☆23Updated 4 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 3 months ago
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆30Updated 2 years ago
• hitbc / gcSV
  ☆21Updated 7 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆19Updated 6 months ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• wdecoster / STRdust
  Tandem repeat genotyping from long reads
  ☆16Updated last week
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• jts / mbtools
  ☆14Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago