☆30Jul 28, 2025Updated 7 months ago
Alternatives and similar repositories for nanopore_benchmark
Users that are interested in nanopore_benchmark are comparing it to the libraries listed below
Sorting:
- ☆16Jul 28, 2025Updated 7 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- ☆13Jun 10, 2025Updated 8 months ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 5 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Sturgeon is a CNS neural network classifier☆46Jan 22, 2026Updated last month
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- a tool for simulating nanopore raw signal data☆73Updated this week
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆26May 10, 2025Updated 9 months ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated 11 months ago
- ☆14Aug 31, 2016Updated 9 years ago
- ☆82Jan 6, 2025Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Updated this week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆184Sep 17, 2024Updated last year
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated last year
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 9 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated this week
- ☆14Oct 5, 2023Updated 2 years ago
- ☆14Apr 12, 2023Updated 2 years ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 3 months ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last week
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- Easy genomic regions for short-read variant calling☆45Sep 10, 2025Updated 5 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated 6 months ago
- Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy☆15Sep 17, 2022Updated 3 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago