Alternatives and similar repositories for nanopore_benchmark

Users that are interested in nanopore_benchmark are comparing it to the libraries listed below

• skovaka / uncalled4
  ☆69Updated 5 months ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆58Updated 2 years ago
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆66Updated 9 months ago
• guangzhaocs / SegPore
  SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
  ☆11Updated last week
• WGLab / DeepMod2
  DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
  ☆50Updated 3 months ago
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆22Updated 7 months ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated 9 months ago
• physnano / rRNA_nanoSHAPE
  Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
  ☆13Updated 3 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆117Updated this week
• comprna / riser
  Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
  ☆15Updated 8 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆65Updated this week
• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• welch-lab / SquiggleNet
  ☆21Updated 2 years ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 2 years ago
• rnajena / read5
  Wrapper to read fast5, slow5, blow5 and pod5 files.
  ☆13Updated 3 months ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆31Updated 3 months ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆16Updated 4 months ago
• PengNi / deepsignal2
  ☆28Updated last year
• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated last month
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆57Updated last year
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆40Updated 11 months ago
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated 2 years ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 4 years ago
• fmfi-compbio / deepnano-blitz
  Very fast ONT basecaller
  ☆53Updated 3 years ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated last year
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆18Updated 2 years ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆52Updated 4 months ago