marcpaga / nanopore_benchmarkLinks
☆30Updated last year
Alternatives and similar repositories for nanopore_benchmark
Users that are interested in nanopore_benchmark are comparing it to the libraries listed below
Sorting:
- Xron - an omni basecaller for ONT reads.☆22Updated 6 months ago
- ☆63Updated 5 months ago
- Predictive kmer models for development use☆56Updated 2 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 3 months ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆11Updated last month
- a tool for simulating nanopore raw signal data☆66Updated 8 months ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated 8 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 10 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- Visualise and analyse nanopore (ONT) raw signals☆116Updated 4 months ago
- A tool for visualising kmers in 2D space.☆9Updated 3 months ago
- ☆17Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆14Updated last year
- jupyter notebooks for Parker et al. eLife 2019☆8Updated 5 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 3 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Updated 3 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆62Updated 2 months ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- ☆20Updated 2 years ago
- ☆28Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- ☆23Updated 2 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆19Updated last month
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Variant calling tool for long-read sequencing data☆110Updated 2 months ago