HMM-HDP models for MinION signal alignments
☆47Apr 10, 2017Updated 9 years ago
Alternatives and similar repositories for signalAlign
Users that are interested in signalAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Jun 24, 2021Updated 5 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Dec 20, 2018Updated 7 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Jan 13, 2022Updated 4 years ago
- ☆46Jul 6, 2017Updated 9 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆120Mar 2, 2026Updated 8 months ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 9 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆37Feb 2, 2022Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆31Jul 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆22Jul 8, 2022Updated 4 years ago
- Methylation/modified base calling separated from basecalling.☆190Sep 17, 2024Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆33Feb 25, 2021Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆64Jan 22, 2021Updated 5 years ago
- UCSC Nanopore☆43Aug 11, 2019Updated 7 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 7 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 11 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Aug 27, 2026Updated 2 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 3 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆173Aug 25, 2026Updated 2 months ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 2 months ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆56Oct 6, 2015Updated 11 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 5 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Apr 29, 2024Updated 2 years ago
- Edinburgh Genomics MinION training 2016☆33Oct 26, 2016Updated 10 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago