Alternatives and similar repositories for signalAlign

Users that are interested in signalAlign are comparing it to the libraries listed below

• al-mcintyre / mCaller

  View on GitHub
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Jun 24, 2021Updated 4 years ago
• nanoporetech / tombo

  View on GitHub
  Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
  ☆234May 4, 2023Updated 2 years ago
• nanoporetech / megalodon

  View on GitHub
  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…
  ☆205May 4, 2023Updated 2 years ago
• marcus1487 / nanoraw

  View on GitHub
  Genome guided re-segmention and visualization for raw nanopore sequencing data.
  ☆47Dec 20, 2018Updated 7 years ago
• novoalab / EpiNano

  View on GitHub
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆118Jul 8, 2025Updated 7 months ago
• DepledgeLab / DRUMMER

  View on GitHub
  DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
  ☆21Jul 8, 2022Updated 3 years ago
• jts / nanopolish

  View on GitHub
  Signal-level algorithms for MinION data
  ☆594Aug 5, 2023Updated 2 years ago
• nanoporetech / scrappie

  View on GitHub
  Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
  ☆93Jan 13, 2022Updated 4 years ago
• opencb / hpg-pore

  View on GitHub
  Nanopore desc
  ☆18Aug 22, 2016Updated 9 years ago
• mdcao / npAnalysis

  View on GitHub
  Software for Nanopore Analysis
  ☆10Mar 14, 2018Updated 7 years ago
• artic-network / readucks

  View on GitHub
  Nanopore read de-multiplexer
  ☆13Mar 25, 2020Updated 5 years ago
• PMBio / pycoMeth

  View on GitHub
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆30Jul 3, 2023Updated 2 years ago
• jts / methylation-analysis

  View on GitHub
  ☆46Jul 6, 2017Updated 8 years ago
• YeoLab / MINES

  View on GitHub
  (m)6A (I)dentification Using (N)anopor(E) (S)equencing
  ☆19Nov 25, 2020Updated 5 years ago
• mateidavid / nanocall

  View on GitHub
  An Oxford Nanopore Basecaller
  ☆70Sep 4, 2021Updated 4 years ago
• scottgigante / picopore

  View on GitHub
  A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
  ☆30Dec 13, 2023Updated 2 years ago
• splatlab / debgr

  View on GitHub
  deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph
  ☆31Jan 19, 2021Updated 5 years ago
• nanoporetech / remora

  View on GitHub
  Methylation/modified base calling separated from basecalling.
  ☆182Sep 17, 2024Updated last year
• mbhall88 / streamformatics

  View on GitHub
  Real-time species-typing visualisation for nanopore data.
  ☆13Apr 11, 2023Updated 2 years ago
• cvdelannoy / poreTally

  View on GitHub
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Feb 11, 2020Updated 6 years ago
• benedictpaten / marginAlign

  View on GitHub
  UCSC Nanopore
  ☆44Aug 11, 2019Updated 6 years ago
• GoekeLab / xpore

  View on GitHub
  Identification of differential RNA modifications from nanopore direct RNA sequencing
  ☆162Nov 7, 2024Updated last year
• nanoporetech / kmer_models

  View on GitHub
  Predictive kmer models for development use
  ☆63Jun 6, 2023Updated 2 years ago
• WGLab / DeepMod

  View on GitHub
  DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
  ☆104Mar 8, 2023Updated 2 years ago
• Flavia95 / VGpop

  View on GitHub
  Population genetics analysis on VG
  ☆17Apr 22, 2021Updated 4 years ago
• BioInf-Wuerzburg / proovread

  View on GitHub
  PacBio hybrid error correction through iterative short read consensus
  ☆60May 17, 2019Updated 6 years ago
• nanoporetech / ont-assembly-polish

  View on GitHub
  ONT assembly and Illumina polishing pipeline
  ☆87Dec 8, 2020Updated 5 years ago
• bioinfomaticsCSU / deepsignal

  View on GitHub
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆118Jun 4, 2023Updated 2 years ago
• rrwick / Basecalling-comparison

  View on GitHub
  A comparison of different Oxford Nanopore basecallers
  ☆316Aug 5, 2019Updated 6 years ago
• novoalab / modPhred

  View on GitHub
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Apr 29, 2024Updated last year
• WGLab / NanoMod

  View on GitHub
  NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
  ☆38Feb 2, 2022Updated 4 years ago
• tleonardi / nanocompore

  View on GitHub
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆88Jan 13, 2026Updated last month
• Psy-Fer / SquiggleKit

  View on GitHub
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆128Feb 16, 2024Updated 2 years ago
• mw55309 / EG_MinION_2016

  View on GitHub
  Edinburgh Genomics MinION training 2016
  ☆33Oct 26, 2016Updated 9 years ago
• haotianteng / Chiron

  View on GitHub
  A basecaller for Oxford Nanopore Technologies' sequencers
  ☆121Jul 6, 2023Updated 2 years ago
• nanoporetech / ont_fast5_api

  View on GitHub
  Oxford Nanopore Technologies fast5 API software
  ☆154Feb 27, 2024Updated last year
• MeHelmy / princess

  View on GitHub
  ☆84Mar 3, 2025Updated 11 months ago
• arnederoeck / NanoSatellite

  View on GitHub
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆32Jul 2, 2020Updated 5 years ago
• a-slide / pycoMeth

  View on GitHub
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Feb 25, 2021Updated 4 years ago