haotianteng / ChironLinks
A basecaller for Oxford Nanopore Technologies' sequencers
☆122Updated 2 years ago
Alternatives and similar repositories for Chiron
Users that are interested in Chiron are comparing it to the libraries listed below
Sorting:
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆125Updated last year
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆104Updated 2 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆100Updated 3 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- Detecting methylation using signal-level features from Nanopore sequencing reads☆116Updated 2 years ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆171Updated last year
- Read Until client library for Nanopore Sequencing☆104Updated 9 months ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Long-read mock community experiments☆105Updated 3 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Predictive kmer models for development use☆58Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆54Updated 9 years ago
- Analysis components from Oxford Nanopore Research☆94Updated 10 months ago
- NEAT read simulation tools☆98Updated 3 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆121Updated 4 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆80Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- ☆123Updated 8 months ago
- Research release basecalling models and configurations☆114Updated 2 months ago
- SV caller for nanopore data☆91Updated 5 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year