Alternatives and similar repositories for Chiron

Users that are interested in Chiron are comparing it to the libraries listed below

• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 4 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆173Updated 2 years ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 4 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆128Updated last year
• HKU-BAL / Clair
  Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
  ☆105Updated 3 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 5 years ago
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆118Updated 2 years ago
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆153Updated last year
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆88Updated 5 years ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆116Updated 7 years ago
• nanoporetech / scrappie
  Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
  ☆93Updated 4 years ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆136Updated 4 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆55Updated 10 years ago
• liyu95 / DeepSimulator
  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  ☆124Updated 5 years ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆63Updated 2 years ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆107Updated last year
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆255Updated 2 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 4 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆146Updated 6 months ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆88Updated 7 years ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆165Updated 3 years ago
• nanoporetech / tombo
  Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
  ☆235Updated 2 years ago
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆182Updated last year
• hyeshik / poreplex
  A versatile sequenced read processor for nanopore direct RNA sequencing
  ☆82Updated 5 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 8 months ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆96Updated last year
• parklab / bamsnap
  ☆122Updated 5 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆195Updated 3 weeks ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆115Updated 4 years ago