Alternatives and similar repositories for Xron

Users that are interested in Xron are comparing it to the libraries listed below

• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆18Updated 2 years ago
• sihaohuanguc / NanoSPA
  ☆14Updated last year
• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• gaoyubang / nanom6A
  ☆23Updated 2 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆40Updated 11 months ago
• yulab2021 / TandemMod
  ☆16Updated 2 months ago
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated 2 years ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆16Updated 4 months ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated last year
• novoalab / nanoRMS
  Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…
  ☆23Updated 2 years ago
• lrslab / nanoCEM
  "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
  ☆15Updated 2 months ago
• WGLab / DeepMod2
  DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
  ☆50Updated 3 months ago
• skovaka / uncalled4
  ☆68Updated 5 months ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated 9 months ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 4 years ago
• bartongroup / yanocomp
  Yet another nanopore modification comparison tool
  ☆12Updated 3 years ago
• RouhanifardLab / PsiNanopore
  ☆9Updated last year
• physnano / rRNA_nanoSHAPE
  Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
  ☆13Updated 3 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆56Updated 5 months ago
• fiberseq / FIRE
  A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
  ☆20Updated last week
• guangzhaocs / SegPore
  SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
  ☆11Updated this week
• mfurla / NanOlympicsMod
  This repository contains the code developed for the NanOlympicsMod project.
  ☆10Updated last year
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 2 years ago
• a-slide / MetaCompore
  Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing
  ☆9Updated 4 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• bartongroup / Simpson_Barton_Nanopore_1
  jupyter notebooks for Parker et al. eLife 2019
  ☆8Updated 5 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Updated 4 years ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago