haotianteng / Xron
Xron - an omni basecaller for ONT reads.
☆21Updated 4 months ago
Alternatives and similar repositories for Xron:
Users that are interested in Xron are comparing it to the libraries listed below
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆17Updated last year
- ☆14Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 8 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated last year
- ☆23Updated 2 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆14Updated last week
- ☆17Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆10Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated last month
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Yet another nanopore modification comparison tool☆12Updated 3 years ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- ☆10Updated last year
- ☆47Updated 2 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated 6 months ago
- jupyter notebooks for Parker et al. eLife 2019☆8Updated 5 years ago
- Python client library for Guppy☆31Updated 2 years ago
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆45Updated 3 weeks ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 11 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Predictive kmer models for development use☆54Updated last year
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆28Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆113Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated 11 months ago