haotianteng / XronLinks
Xron - an omni basecaller for ONT reads.
☆22Updated 9 months ago
Alternatives and similar repositories for Xron
Users that are interested in Xron are comparing it to the libraries listed below
Sorting:
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- ☆14Updated last year
- ☆74Updated 7 months ago
- ☆23Updated 2 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆41Updated last year
- ☆16Updated 5 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆17Updated 6 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆16Updated 4 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Yet another nanopore modification comparison tool☆12Updated 3 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆53Updated 5 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆61Updated last year
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated last month
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Visualise and analyse nanopore (ONT) raw signals☆120Updated last month
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated 11 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Predictive kmer models for development use☆59Updated 2 years ago
- Variant calling tool for long-read sequencing data☆112Updated 5 months ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆12Updated last week
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated this week