Alternatives and similar repositories for taiyaki

Users that are interested in taiyaki are comparing it to the libraries listed below

• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆107Updated last year
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆154Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 4 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆178Updated 2 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 5 years ago
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆118Updated 2 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆128Updated last year
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆115Updated 4 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆126Updated last month
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆160Updated 3 months ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆96Updated last year
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆118Updated 6 months ago
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆181Updated last year
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆116Updated 10 months ago
• HKU-BAL / Clair
  Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
  ☆105Updated 3 years ago
• nanoporetech / megalodon
  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…
  ☆204Updated 2 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 10 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆62Updated 2 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆158Updated 3 weeks ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆225Updated last week
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆181Updated 4 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆246Updated last month
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆88Updated last week
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆131Updated last month