nanoporetech / taiyakiLinks
Training models for basecalling Oxford Nanopore reads
☆115Updated 3 years ago
Alternatives and similar repositories for taiyaki
Users that are interested in taiyaki are comparing it to the libraries listed below
Sorting:
- Flip-flop basecaller for Oxford Nanopore reads☆99Updated 3 years ago
- Read Until client library for Nanopore Sequencing☆107Updated last year
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Research release basecalling models and configurations☆117Updated 6 months ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Updated 3 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆124Updated 3 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆117Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 9 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆203Updated 2 years ago
- ☆123Updated 4 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated 2 weeks ago
- A tool for somatic structural variant calling using long reads☆155Updated last month
- Methylation/modified base calling separated from basecalling.☆179Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 3 months ago
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A complete diploid human genome☆139Updated 2 months ago
- Tools for plotting methylation data in various ways☆165Updated 2 weeks ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 5 months ago