nanoporetech / taiyaki

Related projects: ⓘ

• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆130Updated this week
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆145Updated 6 months ago
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆241Updated 8 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆233Updated last month
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆108Updated 2 months ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆170Updated 3 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆113Updated 2 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆143Updated 9 months ago
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆167Updated last month
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆170Updated 3 years ago
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆152Updated last month
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆124Updated 3 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆205Updated 10 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆257Updated 10 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆123Updated 2 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆122Updated 7 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆207Updated last year
• nanoporetech / megalodon
  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…
  ☆195Updated last year
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆78Updated 2 years ago
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆209Updated last year
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆175Updated 4 months ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆102Updated 6 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆129Updated 3 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆125Updated last year
• wdecoster / chopper
  ☆139Updated last week
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆198Updated last year
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆103Updated 3 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆102Updated 3 months ago
• nanoporetech / tombo
  Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
  ☆229Updated last year