Alternatives and similar repositories for SquiggleKit

Users that are interested in SquiggleKit are comparing it to the libraries listed below

• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆96Updated last year
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 6 months ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 3 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆124Updated 3 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 5 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 2 months ago
• SorenKarst / longread_umi
  ☆80Updated 5 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 5 years ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆107Updated last year
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 3 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 4 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆94Updated 4 months ago
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆117Updated 2 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated 3 weeks ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆110Updated last year
• parklab / bamsnap
  ☆123Updated 4 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆34Updated last month
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 4 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 4 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆124Updated 3 years ago
• HKU-BAL / Clair
  Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
  ☆105Updated 3 years ago