JensUweUlrich / ReadBouncer
Fast and scalable nanopore adaptive sampling
☆33Updated last year
Alternatives and similar repositories for ReadBouncer:
Users that are interested in ReadBouncer are comparing it to the libraries listed below
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Genome size estimation from long read overlaps☆51Updated 3 months ago
- Find Unique genomic Regions☆29Updated 2 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- crab go snap snap☆37Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 6 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 10 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated 11 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 3 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pan-Genomic Matching Statistics☆52Updated 11 months ago
- ☆28Updated last year
- Remove human reads from a sequencing run☆38Updated 5 months ago
- Differential k-mer analysis☆34Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated 3 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 8 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 2 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated last year