JensUweUlrich / ReadBouncerLinks
Fast and scalable nanopore adaptive sampling
☆34Updated 2 years ago
Alternatives and similar repositories for ReadBouncer
Users that are interested in ReadBouncer are comparing it to the libraries listed below
Sorting:
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 5 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Updated 3 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- Differential k-mer analysis☆39Updated 2 years ago
- ☆30Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆30Updated 2 years ago
- ☆44Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆40Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated last week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆52Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago