JensUweUlrich / ReadBouncerLinks
Fast and scalable nanopore adaptive sampling
☆34Updated 2 years ago
Alternatives and similar repositories for ReadBouncer
Users that are interested in ReadBouncer are comparing it to the libraries listed below
Sorting:
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 3 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Pan-Genomic Matching Statistics☆54Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- Find Unique genomic Regions☆32Updated last month
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Linear-time de novo Long Read Assembler☆41Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆45Updated 2 weeks ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- ☆30Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- ☆30Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆57Updated 7 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated this week
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- Colinear block visualisation tool☆31Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago